Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4624

Experiment: N1B4wt with N2E2m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E2m denitrifying replicate C
5,352,629	+				-1.6
5,352,629	+		Pf6N2E2_4622	0.79	-0.1
5,352,630	-		Pf6N2E2_4622	0.79	+0.2
5,352,630	-		Pf6N2E2_4622	0.79	+0.0
5,352,630	-		Pf6N2E2_4622	0.79	+0.3
5,352,630	-		Pf6N2E2_4622	0.79	+0.4
5,352,791	+				-0.3
5,352,792	-				-0.1
5,352,817	+				+0.2
5,352,818	-				-0.9
5,353,108	+		Pf6N2E2_4623	0.37	-0.8
5,353,109	-		Pf6N2E2_4623	0.37	+0.6
5,353,109	-		Pf6N2E2_4623	0.37	-0.0
5,353,168	+		Pf6N2E2_4623	0.45	-0.1
5,353,169	-		Pf6N2E2_4623	0.45	+0.2
5,353,169	-		Pf6N2E2_4623	0.45	-0.2
5,353,169	-		Pf6N2E2_4623	0.45	-0.3
5,353,253	-		Pf6N2E2_4623	0.55	+1.0
5,353,390	+		Pf6N2E2_4623	0.72	+0.2
5,353,390	+		Pf6N2E2_4623	0.72	-1.1
5,353,390	+		Pf6N2E2_4623	0.72	+0.5
5,353,391	-		Pf6N2E2_4623	0.73	+0.1
5,353,391	-		Pf6N2E2_4623	0.73	+0.1
5,353,391	-		Pf6N2E2_4623	0.73	+0.2
5,353,391	-		Pf6N2E2_4623	0.73	-0.4
5,353,391	-		Pf6N2E2_4623	0.73	+0.7
5,353,558	+				-0.1
5,353,559	-				-0.5
5,353,613	+				-0.5
5,353,613	+				-0.3
5,353,613	+				+0.7
5,353,613	+				+0.6
5,353,613	+				-0.4
5,353,613	+				-0.1
5,353,614	-				+0.0
5,353,614	-				-0.1
5,353,614	-				+0.6
5,353,614	-				-0.8
5,353,614	-				+0.3
5,353,614	-				-0.7
5,353,617	+				-0.8
5,353,617	+				-0.2
5,353,617	+				-0.3
5,353,617	+				-0.4
5,353,617	+				-0.4
5,353,617	+				-0.3
5,353,617	+				-0.3
5,353,617	+				+0.3
5,353,617	+				+0.7
5,353,617	+				+0.6
5,353,617	+				-1.0
5,353,618	-				+0.7
5,353,618	-				+0.2
5,353,618	-				-1.5
5,353,618	-				+0.2
5,353,618	-				-0.6
5,353,618	-				+0.2
5,353,618	-				+0.3
5,353,618	-				+0.3
5,353,618	-				+0.4
5,353,618	-				+0.8
5,353,789	-		Pf6N2E2_4624	0.29	-0.8
5,354,450	+		Pf6N2E2_4625	0.24	-0.4
5,354,451	-		Pf6N2E2_4625	0.25	-0.1
5,354,451	-		Pf6N2E2_4625	0.25	+0.6
5,354,451	-		Pf6N2E2_4625	0.25	-0.0
5,354,564	+		Pf6N2E2_4625	0.37	+1.7
5,354,873	+		Pf6N2E2_4625	0.70	+0.0
5,354,985	-		Pf6N2E2_4625	0.83	+0.1
5,355,143	+				-0.3
5,355,143	+				-0.4
5,355,206	+				-0.7
5,355,206	+				+0.2
5,355,207	-				+0.7
5,355,218	+				+0.4
5,355,218	+				+0.0
5,355,218	+				+0.2
5,355,218	+				+0.5
5,355,218	+				-0.1
5,355,219	-				-0.3
5,355,222	+				+0.7
5,355,222	+				+0.7
5,355,222	+				+0.1
5,355,222	+				+0.1
5,355,223	-				+0.5
5,355,223	-				+0.0