Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4204
Experiment: N1B4wt with N2E2m denitrifying replicate C
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | N1B4wt with N2E2m denitrifying replicate C |
---|---|---|---|---|---|
remove | |||||
4,896,059 | - | Pf6N2E2_4204 | 0.20 | +0.7 | |
4,896,059 | - | Pf6N2E2_4204 | 0.20 | -0.8 | |
4,896,304 | - | Pf6N2E2_4204 | 0.58 | +0.3 | |
4,896,549 | - | +0.7 | |||
4,896,592 | - | +0.0 | |||
4,896,597 | - | +1.7 | |||
4,896,597 | - | +0.7 | |||
4,896,646 | - | -1.8 | |||
4,896,766 | + | Pf6N2E2_4205 | 0.23 | +0.7 | |
4,896,767 | - | Pf6N2E2_4205 | 0.23 | +0.0 | |
4,896,941 | - | Pf6N2E2_4205 | 0.44 | +0.7 | |
4,896,947 | - | Pf6N2E2_4205 | 0.45 | +0.7 | |
4,896,947 | - | Pf6N2E2_4205 | 0.45 | +1.1 | |
4,896,947 | - | Pf6N2E2_4205 | 0.45 | +0.7 | |
4,897,039 | + | Pf6N2E2_4205 | 0.57 | -0.3 | |
4,897,040 | - | Pf6N2E2_4205 | 0.57 | -1.4 | |
4,897,040 | - | Pf6N2E2_4205 | 0.57 | -2.7 | |
4,897,142 | - | Pf6N2E2_4205 | 0.70 | -0.3 | |
4,897,142 | - | Pf6N2E2_4205 | 0.70 | -0.3 | |
4,897,381 | + | -1.1 | |||
4,897,381 | + | +0.2 | |||
4,897,537 | + | Pf6N2E2_4206 | 0.16 | +0.7 | |
4,897,537 | + | Pf6N2E2_4206 | 0.16 | +0.1 | |
4,897,538 | - | Pf6N2E2_4206 | 0.17 | -1.0 |
Or see this region's nucleotide sequence