Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2619

Experiment: N1B4wt with N2E2m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E2m denitrifying replicate C
3,076,399	+		Pf6N2E2_2618	0.17	-0.1
3,076,399	+		Pf6N2E2_2618	0.17	-0.3
3,076,399	+		Pf6N2E2_2618	0.17	+2.7
3,076,399	+		Pf6N2E2_2618	0.17	+0.2
3,076,399	+		Pf6N2E2_2618	0.17	+0.1
3,076,400	-		Pf6N2E2_2618	0.17	-0.3
3,076,400	-		Pf6N2E2_2618	0.17	+0.3
3,076,400	-		Pf6N2E2_2618	0.17	-0.1
3,076,400	-		Pf6N2E2_2618	0.17	-0.2
3,076,400	-		Pf6N2E2_2618	0.17	-1.2
3,076,400	-		Pf6N2E2_2618	0.17	-0.8
3,076,539	-		Pf6N2E2_2618	0.30	-0.0
3,076,558	+		Pf6N2E2_2618	0.32	-1.1
3,076,559	-		Pf6N2E2_2618	0.32	-0.2
3,076,559	-		Pf6N2E2_2618	0.32	-0.7
3,076,559	-		Pf6N2E2_2618	0.32	-1.5
3,076,559	-		Pf6N2E2_2618	0.32	-0.4
3,076,618	+		Pf6N2E2_2618	0.37	-0.5
3,076,618	+		Pf6N2E2_2618	0.37	+0.2
3,076,618	+		Pf6N2E2_2618	0.37	+0.1
3,076,699	+		Pf6N2E2_2618	0.45	-0.1
3,076,776	-		Pf6N2E2_2618	0.52	-0.6
3,076,880	+		Pf6N2E2_2618	0.62	+0.4
3,076,880	+		Pf6N2E2_2618	0.62	+0.6
3,076,881	-		Pf6N2E2_2618	0.62	+0.2
3,076,881	-		Pf6N2E2_2618	0.62	+0.1
3,076,976	+		Pf6N2E2_2618	0.71	+0.7
3,076,976	+		Pf6N2E2_2618	0.71	-0.1
3,076,976	+		Pf6N2E2_2618	0.71	-0.3
3,076,977	-		Pf6N2E2_2618	0.71	-0.1
3,076,977	-		Pf6N2E2_2618	0.71	+0.8
3,076,977	-		Pf6N2E2_2618	0.71	-1.1
3,076,981	-		Pf6N2E2_2618	0.71	+0.0
3,077,236	-				+0.4
3,077,456	+		Pf6N2E2_2619	0.23	-0.3
3,077,456	+		Pf6N2E2_2619	0.23	+0.3
3,077,457	-		Pf6N2E2_2619	0.23	-0.2
3,077,457	-		Pf6N2E2_2619	0.23	+0.2
3,077,457	-		Pf6N2E2_2619	0.23	-0.2
3,077,457	-		Pf6N2E2_2619	0.23	+0.0
3,077,457	-		Pf6N2E2_2619	0.23	-1.2
3,077,459	-		Pf6N2E2_2619	0.24	-0.3
3,077,459	-		Pf6N2E2_2619	0.24	-0.5
3,077,459	-		Pf6N2E2_2619	0.24	-0.3
3,077,459	-		Pf6N2E2_2619	0.24	+0.4
3,077,481	+		Pf6N2E2_2619	0.26	+0.2
3,077,674	+		Pf6N2E2_2619	0.52	-0.4
3,077,674	+		Pf6N2E2_2619	0.52	-2.6
3,077,675	-		Pf6N2E2_2619	0.52	-0.0
3,077,788	+		Pf6N2E2_2619	0.67	-0.9
3,077,788	+		Pf6N2E2_2619	0.67	-0.7
3,077,788	+		Pf6N2E2_2619	0.67	-0.3
3,077,822	+		Pf6N2E2_2619	0.71	+0.7
3,077,823	-		Pf6N2E2_2619	0.72	-1.1
3,077,854	+		Pf6N2E2_2619	0.76	-0.8
3,077,854	+		Pf6N2E2_2619	0.76	-0.3
3,077,855	-		Pf6N2E2_2619	0.76	-0.3
3,077,881	+		Pf6N2E2_2619	0.79	-0.6
3,077,882	-		Pf6N2E2_2619	0.79	-0.8
3,077,891	-		Pf6N2E2_2619	0.81	-0.3
3,077,891	-		Pf6N2E2_2619	0.81	-1.0
3,077,891	-		Pf6N2E2_2619	0.81	+0.8
3,078,041	+				+0.2
3,078,042	-				-0.0
3,078,119	-				+0.1
3,078,170	-				-1.9
3,078,177	+				+1.0
3,078,178	-				+0.3
3,078,265	-				-0.3
3,078,282	-				+1.5
3,078,378	+		Pf6N2E2_2620	0.22	+0.1
3,078,378	+		Pf6N2E2_2620	0.22	+0.1
3,078,378	+		Pf6N2E2_2620	0.22	+0.2
3,078,378	+		Pf6N2E2_2620	0.22	-0.5
3,078,378	+		Pf6N2E2_2620	0.22	+0.7
3,078,378	+		Pf6N2E2_2620	0.22	+0.7
3,078,379	-		Pf6N2E2_2620	0.22	+1.4
3,078,379	-		Pf6N2E2_2620	0.22	+0.2
3,078,420	+		Pf6N2E2_2620	0.39	+0.3
3,078,421	-		Pf6N2E2_2620	0.39	-0.3
3,078,421	-		Pf6N2E2_2620	0.39	+0.9
3,078,424	+		Pf6N2E2_2620	0.41	+0.5
3,078,424	+		Pf6N2E2_2620	0.41	-0.4
3,078,496	+		Pf6N2E2_2620	0.69	+0.4
3,078,660	+				-0.6
3,078,661	-				+0.9
3,078,697	+				-0.9
3,078,697	+				+0.7
3,078,698	-				-0.5
3,078,698	-				-0.1
3,078,698	-				-1.3
3,078,698	-				-0.5
3,078,841	-				-0.0