Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2423

Experiment: N1B4wt with N2E2m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E2m denitrifying replicate C
2,873,078	-		Pf6N2E2_2422	0.20	-0.3
2,873,093	+		Pf6N2E2_2422	0.21	-1.4
2,873,093	+		Pf6N2E2_2422	0.21	-0.1
2,873,093	+		Pf6N2E2_2422	0.21	-0.4
2,873,100	+		Pf6N2E2_2422	0.22	-0.5
2,873,159	+		Pf6N2E2_2422	0.26	-1.2
2,873,159	+		Pf6N2E2_2422	0.26	+0.5
2,873,178	+		Pf6N2E2_2422	0.28	-0.7
2,873,351	+		Pf6N2E2_2422	0.42	-0.7
2,873,369	-		Pf6N2E2_2422	0.44	-1.1
2,873,435	-		Pf6N2E2_2422	0.49	-1.4
2,873,435	-		Pf6N2E2_2422	0.49	-2.4
2,873,436	+		Pf6N2E2_2422	0.49	-0.7
2,873,436	+		Pf6N2E2_2422	0.49	-1.3
2,873,436	+		Pf6N2E2_2422	0.49	-1.2
2,873,436	+		Pf6N2E2_2422	0.49	-0.0
2,873,436	+		Pf6N2E2_2422	0.49	-0.9
2,873,437	-		Pf6N2E2_2422	0.49	-1.6
2,873,437	-		Pf6N2E2_2422	0.49	-2.2
2,873,437	-		Pf6N2E2_2422	0.49	-2.0
2,873,437	-		Pf6N2E2_2422	0.49	-0.9
2,873,437	-		Pf6N2E2_2422	0.49	-1.3
2,873,437	-		Pf6N2E2_2422	0.49	-0.8
2,873,857	-		Pf6N2E2_2422	0.83	-1.1
2,873,857	-		Pf6N2E2_2422	0.83	-0.8
2,873,867	-		Pf6N2E2_2422	0.84	-0.5
2,874,186	+		Pf6N2E2_2423	0.26	-1.2
2,874,186	+		Pf6N2E2_2423	0.26	-2.3
2,874,186	+		Pf6N2E2_2423	0.26	-1.6
2,874,187	-		Pf6N2E2_2423	0.26	-1.0
2,874,187	-		Pf6N2E2_2423	0.26	-1.3
2,874,418	+		Pf6N2E2_2423	0.69	-1.6
2,874,418	+		Pf6N2E2_2423	0.69	-0.6
2,874,418	+		Pf6N2E2_2423	0.69	-2.2
2,874,419	-		Pf6N2E2_2423	0.69	-0.4
2,874,501	-		Pf6N2E2_2423	0.84	-0.6
2,874,501	-		Pf6N2E2_2423	0.84	-0.2
2,874,515	+		Pf6N2E2_2423	0.87	-0.8
2,874,521	+		Pf6N2E2_2423	0.88	-0.9
2,874,521	+		Pf6N2E2_2423	0.88	-0.3
2,874,521	+		Pf6N2E2_2423	0.88	+0.4
2,874,522	-		Pf6N2E2_2423	0.88	+0.6
2,874,564	+				+0.1
2,874,564	+				-0.8
2,874,564	+				-1.0
2,874,564	+				-1.1
2,874,565	-				-1.0
2,874,565	-				-1.4
2,874,565	-				-3.4
2,874,620	+				-2.2
2,874,620	+				+1.0
2,874,620	+				-2.7
2,874,620	+				+0.7
2,874,620	+				-0.3
2,874,620	+				-0.7
2,874,620	+				-0.4
2,874,620	+				-1.5
2,874,621	-				-0.3
2,874,621	-				-0.8
2,874,621	-				-0.2
2,874,621	-				+0.2
2,874,621	-				-1.6
2,874,621	-				-0.7
2,874,621	-				-0.2
2,874,621	-				-0.4
2,874,622	+				-1.3
2,874,622	+				-1.3
2,874,623	-				+1.0
2,874,840	-		Pf6N2E2_2424	0.29	+0.5
2,874,861	+		Pf6N2E2_2424	0.33	-1.7
2,874,861	+		Pf6N2E2_2424	0.33	-3.0
2,874,861	+		Pf6N2E2_2424	0.33	-1.1
2,874,862	-		Pf6N2E2_2424	0.33	-0.9
2,874,951	+		Pf6N2E2_2424	0.48	-1.1
2,874,952	-		Pf6N2E2_2424	0.48	-2.8
2,875,235	-				-1.9
2,875,247	+				+0.2
2,875,247	+				+0.2
2,875,248	-				+0.3
2,875,269	+				-0.4
2,875,292	+				-0.4
2,875,292	+				+0.3
2,875,292	+				+0.4
2,875,292	+				-0.6
2,875,292	+				+0.6
2,875,292	+				-0.6
2,875,292	+				-0.0
2,875,292	+				+0.2
2,875,292	+				-0.0
2,875,292	+				-0.2
2,875,293	-				+0.7
2,875,293	-				+0.7
2,875,293	-				+1.4
2,875,293	-				+0.7
2,875,293	-				-0.2
2,875,293	-				-0.6
2,875,294	+				+0.2
2,875,294	+				+0.7
2,875,294	+				-1.4
2,875,295	-				+0.7
2,875,295	-				+0.2
2,875,295	-				-0.8
2,875,295	-				+0.6
2,875,310	+				-0.4
2,875,467	+		Pf6N2E2_2425	0.57	+0.6
2,875,467	+		Pf6N2E2_2425	0.57	+0.4
2,875,488	+		Pf6N2E2_2425	0.66	+0.7
2,875,488	+		Pf6N2E2_2425	0.66	+0.7
2,875,489	-		Pf6N2E2_2425	0.67	+0.2
2,875,544	+				+0.7
2,875,544	+				+0.2
2,875,545	-				-0.4
2,875,560	+				+0.3
2,875,561	-				-1.5
2,875,584	-				+0.3