Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3541

Experiment: Cephalothin 2.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 2.5 mg/ml
3,946,747	+		Pf1N1B4_3539	0.83	+0.1
3,946,747	+				-0.1
3,946,819	+				+1.5
3,946,819	+				-0.7
3,946,866	+				-0.9
3,946,866	+				+1.2
3,946,898	+				+0.9
3,946,898	+				+0.3
3,946,899	-				-0.9
3,946,899	-				+1.2
3,946,899	-				-0.1
3,946,958	+				-0.1
3,946,959	-				+0.7
3,946,959	-				+1.5
3,946,959	-				+0.7
3,946,973	+				+0.7
3,946,974	-				+0.5
3,946,974	-				-0.1
3,947,123	+				-0.1
3,947,186	+		Pf1N1B4_3540	0.38	-1.1
3,947,186	+		Pf1N1B4_3540	0.38	+0.3
3,947,186	+		Pf1N1B4_3540	0.38	+1.5
3,947,187	-		Pf1N1B4_3540	0.38	-0.1
3,947,187	-		Pf1N1B4_3540	0.38	+0.2
3,947,187	-		Pf1N1B4_3540	0.38	-0.1
3,947,187	-		Pf1N1B4_3540	0.38	+1.5
3,947,190	-		Pf1N1B4_3540	0.39	+1.7
3,947,282	+		Pf1N1B4_3540	0.54	+0.9
3,947,330	+		Pf1N1B4_3540	0.63	+1.9
3,947,330	+				+1.5
3,947,331	-		Pf1N1B4_3540	0.63	+1.2
3,947,331	-		Pf1N1B4_3540	0.63	-0.9
3,947,331	-		Pf1N1B4_3540	0.63	-0.7
3,947,331	-		Pf1N1B4_3540	0.63	-0.1
3,947,331	-		Pf1N1B4_3540	0.63	+1.1
3,947,331	-		Pf1N1B4_3540	0.63	-0.5
3,947,331	-				+0.5
3,947,425	+		Pf1N1B4_3540	0.79	+1.5
3,947,523	+				-1.5
3,947,524	-				+0.9
3,947,592	+				-0.5
3,947,652	-				+0.9
3,947,652	-				-0.7
3,947,684	+		Pf1N1B4_3541	0.11	+1.0
3,947,685	-		Pf1N1B4_3541	0.11	-0.5
3,947,685	-		Pf1N1B4_3541	0.11	-0.1
3,947,778	+				+1.5
3,947,778	+		Pf1N1B4_3541	0.41	-0.1
3,947,778	+		Pf1N1B4_3541	0.41	+0.5
3,947,778	+		Pf1N1B4_3541	0.41	-1.1
3,947,779	-		Pf1N1B4_3541	0.41	-0.7
3,947,779	-		Pf1N1B4_3541	0.41	+0.1
3,947,779	-		Pf1N1B4_3541	0.41	-0.7
3,947,779	-		Pf1N1B4_3541	0.41	+0.9
3,947,913	-		Pf1N1B4_3541	0.84	-1.5
3,948,015	+				+2.5
3,948,015	+				+0.5
3,948,016	-				-1.7
3,948,019	+				+0.3
3,948,020	-				+1.9
3,948,020	-				-1.7
3,948,057	-				-1.1
3,948,068	+				+0.9
3,948,069	-				-1.6
3,948,109	+				+0.9
3,948,113	-				-0.3
3,948,225	+				+1.5
3,948,483	+		Pf1N1B4_3542	0.32	-0.3
3,948,648	+		Pf1N1B4_3542	0.48	-0.1
3,948,648	+		Pf1N1B4_3542	0.48	+0.9
3,948,648	+		Pf1N1B4_3542	0.48	+0.5
3,948,648	+				-1.1
3,948,648	+		Pf1N1B4_3542	0.48	-0.7
3,948,648	+		Pf1N1B4_3542	0.48	+0.1
3,948,648	+		Pf1N1B4_3542	0.48	-0.3
3,948,648	+		Pf1N1B4_3542	0.48	+0.9
3,948,649	-		Pf1N1B4_3542	0.48	-2.9
3,948,690	+		Pf1N1B4_3542	0.52	-1.5
3,948,691	-				+0.9
3,948,691	-		Pf1N1B4_3542	0.52	-1.1
3,948,786	+		Pf1N1B4_3542	0.62	+0.1
3,948,787	-		Pf1N1B4_3542	0.62	+0.5
3,948,838	+				-0.1
3,948,838	+		Pf1N1B4_3542	0.67	+0.4
3,948,875	+		Pf1N1B4_3542	0.70	+0.8