Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3432

Experiment: Cephalothin 2.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3431 and Pf1N1B4_3432 are separated by 90 nucleotidesPf1N1B4_3432 and Pf1N1B4_3433 overlap by 4 nucleotidesPf1N1B4_3433 and Pf1N1B4_3434 are separated by 1 nucleotides Pf1N1B4_3431 - ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data), at 3,824,839 to 3,825,612 _3431 Pf1N1B4_3432 - ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data), at 3,825,703 to 3,826,392 _3432 Pf1N1B4_3433 - ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data), at 3,826,389 to 3,827,087 _3433 Pf1N1B4_3434 - Succinylglutamate desuccinylase/aspartoacylase, at 3,827,089 to 3,828,201 _3434 Position (kb) 3825 3826 3827Strain fitness (log2 ratio) -2 -1 0 1 2at 3824.747 kb on + strandat 3824.747 kb on + strandat 3824.748 kb on - strandat 3824.748 kb on - strandat 3824.748 kb on - strandat 3824.786 kb on - strandat 3824.990 kb on - strand, within Pf1N1B4_3431at 3824.990 kb on - strand, within Pf1N1B4_3431at 3824.990 kb on - strand, within Pf1N1B4_3431at 3825.157 kb on + strand, within Pf1N1B4_3431at 3825.157 kb on + strand, within Pf1N1B4_3431at 3825.157 kb on + strand, within Pf1N1B4_3431at 3825.157 kb on + strand, within Pf1N1B4_3431at 3825.158 kb on - strand, within Pf1N1B4_3431at 3825.158 kb on - strand, within Pf1N1B4_3431at 3825.158 kb on - strandat 3825.158 kb on - strandat 3825.160 kb on + strand, within Pf1N1B4_3431at 3825.160 kb on + strand, within Pf1N1B4_3431at 3825.160 kb on + strand, within Pf1N1B4_3431at 3825.160 kb on + strand, within Pf1N1B4_3431at 3825.160 kb on + strand, within Pf1N1B4_3431at 3825.160 kb on + strand, within Pf1N1B4_3431at 3825.160 kb on + strand, within Pf1N1B4_3431at 3825.160 kb on + strand, within Pf1N1B4_3431at 3825.160 kb on + strand, within Pf1N1B4_3431at 3825.161 kb on - strand, within Pf1N1B4_3431at 3825.161 kb on - strand, within Pf1N1B4_3431at 3825.161 kb on - strand, within Pf1N1B4_3431at 3825.161 kb on - strand, within Pf1N1B4_3431at 3825.161 kb on - strand, within Pf1N1B4_3431at 3825.161 kb on - strand, within Pf1N1B4_3431at 3825.161 kb on - strand, within Pf1N1B4_3431at 3825.161 kb on - strandat 3825.161 kb on - strand, within Pf1N1B4_3431at 3825.161 kb on - strand, within Pf1N1B4_3431at 3825.316 kb on + strand, within Pf1N1B4_3431at 3825.317 kb on - strand, within Pf1N1B4_3431at 3825.337 kb on + strand, within Pf1N1B4_3431at 3825.338 kb on - strand, within Pf1N1B4_3431at 3825.466 kb on + strand, within Pf1N1B4_3431at 3825.466 kb on + strand, within Pf1N1B4_3431at 3825.466 kb on + strand, within Pf1N1B4_3431at 3825.466 kb on + strand, within Pf1N1B4_3431at 3825.562 kb on + strandat 3825.562 kb on + strandat 3825.562 kb on + strandat 3825.562 kb on + strandat 3825.562 kb on + strandat 3825.562 kb on + strandat 3825.562 kb on + strandat 3825.563 kb on - strandat 3825.563 kb on - strandat 3825.563 kb on - strandat 3825.563 kb on - strandat 3825.563 kb on - strandat 3825.563 kb on - strandat 3825.583 kb on + strandat 3825.583 kb on + strandat 3825.583 kb on + strandat 3825.584 kb on - strandat 3825.584 kb on - strandat 3825.584 kb on - strandat 3825.584 kb on - strandat 3825.584 kb on - strandat 3825.601 kb on + strandat 3825.601 kb on + strandat 3825.601 kb on + strandat 3825.601 kb on + strandat 3825.601 kb on + strandat 3825.602 kb on - strandat 3825.610 kb on + strandat 3825.610 kb on + strandat 3825.610 kb on + strandat 3825.610 kb on + strandat 3825.610 kb on + strandat 3825.610 kb on + strandat 3825.611 kb on - strandat 3825.611 kb on - strandat 3825.611 kb on - strandat 3825.611 kb on - strandat 3825.611 kb on - strandat 3825.611 kb on - strandat 3825.611 kb on - strandat 3825.740 kb on + strandat 3825.856 kb on + strand, within Pf1N1B4_3432at 3825.856 kb on + strand, within Pf1N1B4_3432at 3825.857 kb on - strand, within Pf1N1B4_3432at 3825.857 kb on - strand, within Pf1N1B4_3432at 3825.857 kb on - strand, within Pf1N1B4_3432at 3825.857 kb on - strand, within Pf1N1B4_3432at 3825.910 kb on + strand, within Pf1N1B4_3432at 3825.964 kb on + strand, within Pf1N1B4_3432at 3825.964 kb on + strand, within Pf1N1B4_3432at 3825.964 kb on + strand, within Pf1N1B4_3432at 3825.964 kb on + strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3825.965 kb on - strand, within Pf1N1B4_3432at 3826.024 kb on + strand, within Pf1N1B4_3432at 3826.024 kb on + strand, within Pf1N1B4_3432at 3826.024 kb on + strand, within Pf1N1B4_3432at 3826.024 kb on + strand, within Pf1N1B4_3432at 3826.025 kb on - strand, within Pf1N1B4_3432at 3826.025 kb on - strand, within Pf1N1B4_3432at 3826.025 kb on - strand, within Pf1N1B4_3432at 3826.025 kb on - strand, within Pf1N1B4_3432at 3826.306 kb on + strand, within Pf1N1B4_3432at 3826.306 kb on + strand, within Pf1N1B4_3432at 3826.307 kb on - strand, within Pf1N1B4_3432at 3826.307 kb on - strand, within Pf1N1B4_3432at 3826.307 kb on - strand, within Pf1N1B4_3432at 3826.374 kb on - strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.388 kb on + strandat 3826.389 kb on - strandat 3826.389 kb on - strandat 3826.389 kb on - strandat 3826.389 kb on - strandat 3826.389 kb on - strandat 3826.401 kb on + strandat 3826.401 kb on + strandat 3826.401 kb on + strandat 3826.402 kb on - strandat 3826.402 kb on - strandat 3826.402 kb on - strandat 3826.402 kb on - strandat 3826.566 kb on + strand, within Pf1N1B4_3433at 3826.566 kb on + strand, within Pf1N1B4_3433at 3826.566 kb on + strand, within Pf1N1B4_3433at 3826.567 kb on - strand, within Pf1N1B4_3433at 3826.567 kb on - strand, within Pf1N1B4_3433at 3826.567 kb on - strand, within Pf1N1B4_3433at 3826.611 kb on + strand, within Pf1N1B4_3433at 3826.611 kb on + strand, within Pf1N1B4_3433at 3826.612 kb on - strandat 3826.719 kb on + strand, within Pf1N1B4_3433at 3826.719 kb on + strand, within Pf1N1B4_3433at 3826.719 kb on + strand, within Pf1N1B4_3433at 3826.719 kb on + strand, within Pf1N1B4_3433at 3826.720 kb on - strand, within Pf1N1B4_3433at 3826.720 kb on - strand, within Pf1N1B4_3433at 3826.812 kb on + strand, within Pf1N1B4_3433at 3826.813 kb on - strand, within Pf1N1B4_3433at 3826.813 kb on - strand, within Pf1N1B4_3433at 3826.813 kb on - strand, within Pf1N1B4_3433at 3826.813 kb on - strand, within Pf1N1B4_3433at 3826.861 kb on - strand, within Pf1N1B4_3433at 3826.861 kb on - strand, within Pf1N1B4_3433at 3826.861 kb on - strand, within Pf1N1B4_3433at 3826.861 kb on - strand, within Pf1N1B4_3433at 3826.962 kb on + strand, within Pf1N1B4_3433at 3826.962 kb on + strand, within Pf1N1B4_3433at 3826.962 kb on + strand, within Pf1N1B4_3433at 3826.962 kb on + strand, within Pf1N1B4_3433at 3826.963 kb on - strand, within Pf1N1B4_3433at 3826.963 kb on - strand, within Pf1N1B4_3433at 3826.963 kb on - strand, within Pf1N1B4_3433at 3826.963 kb on - strand, within Pf1N1B4_3433at 3826.963 kb on - strand, within Pf1N1B4_3433at 3826.963 kb on - strand, within Pf1N1B4_3433at 3826.963 kb on - strand, within Pf1N1B4_3433at 3826.980 kb on + strand, within Pf1N1B4_3433at 3826.980 kb on + strand, within Pf1N1B4_3433at 3826.980 kb on + strand, within Pf1N1B4_3433at 3826.980 kb on + strand, within Pf1N1B4_3433at 3826.980 kb on + strand, within Pf1N1B4_3433at 3826.980 kb on + strand, within Pf1N1B4_3433at 3826.981 kb on - strand, within Pf1N1B4_3433at 3826.981 kb on - strand, within Pf1N1B4_3433at 3826.981 kb on - strand, within Pf1N1B4_3433at 3827.001 kb on + strand, within Pf1N1B4_3433at 3827.001 kb on + strand, within Pf1N1B4_3433at 3827.001 kb on + strand, within Pf1N1B4_3433at 3827.001 kb on + strand, within Pf1N1B4_3433at 3827.001 kb on + strand, within Pf1N1B4_3433at 3827.002 kb on - strand, within Pf1N1B4_3433at 3827.002 kb on - strand, within Pf1N1B4_3433at 3827.002 kb on - strand, within Pf1N1B4_3433at 3827.002 kb on - strand, within Pf1N1B4_3433at 3827.002 kb on - strand, within Pf1N1B4_3433at 3827.089 kb on - strandat 3827.089 kb on - strandat 3827.182 kb on + strandat 3827.182 kb on + strandat 3827.182 kb on + strandat 3827.182 kb on + strandat 3827.183 kb on - strandat 3827.183 kb on - strandat 3827.183 kb on - strandat 3827.183 kb on - strandat 3827.183 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 2.5 mg/ml
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3,824,747 + +0.9
3,824,747 + -1.1
3,824,748 - +0.4
3,824,748 - +0.0
3,824,748 - -0.1
3,824,786 - +0.6
3,824,990 - Pf1N1B4_3431 0.20 -0.4
3,824,990 - Pf1N1B4_3431 0.20 -0.1
3,824,990 - Pf1N1B4_3431 0.20 +0.9
3,825,157 + Pf1N1B4_3431 0.41 +0.9
3,825,157 + Pf1N1B4_3431 0.41 +0.3
3,825,157 + Pf1N1B4_3431 0.41 +0.6
3,825,157 + Pf1N1B4_3431 0.41 -0.1
3,825,158 - Pf1N1B4_3431 0.41 -0.4
3,825,158 - Pf1N1B4_3431 0.41 -1.1
3,825,158 - +1.2
3,825,158 - -1.1
3,825,160 + Pf1N1B4_3431 0.41 +0.2
3,825,160 + Pf1N1B4_3431 0.41 -0.5
3,825,160 + Pf1N1B4_3431 0.41 -1.7
3,825,160 + Pf1N1B4_3431 0.41 -0.1
3,825,160 + Pf1N1B4_3431 0.41 +0.1
3,825,160 + Pf1N1B4_3431 0.41 -0.1
3,825,160 + Pf1N1B4_3431 0.41 +1.5
3,825,160 + Pf1N1B4_3431 0.41 +0.4
3,825,160 + Pf1N1B4_3431 0.41 +1.4
3,825,161 - Pf1N1B4_3431 0.42 -0.5
3,825,161 - Pf1N1B4_3431 0.42 -1.3
3,825,161 - Pf1N1B4_3431 0.42 +1.5
3,825,161 - Pf1N1B4_3431 0.42 +0.5
3,825,161 - Pf1N1B4_3431 0.42 +0.3
3,825,161 - Pf1N1B4_3431 0.42 +0.7
3,825,161 - Pf1N1B4_3431 0.42 -1.4
3,825,161 - -2.1
3,825,161 - Pf1N1B4_3431 0.42 +0.9
3,825,161 - Pf1N1B4_3431 0.42 -1.7
3,825,316 + Pf1N1B4_3431 0.62 -0.1
3,825,317 - Pf1N1B4_3431 0.62 -0.6
3,825,337 + Pf1N1B4_3431 0.64 +0.6
3,825,338 - Pf1N1B4_3431 0.64 +0.3
3,825,466 + Pf1N1B4_3431 0.81 -0.4
3,825,466 + Pf1N1B4_3431 0.81 -0.1
3,825,466 + Pf1N1B4_3431 0.81 +0.9
3,825,466 + Pf1N1B4_3431 0.81 -0.1
3,825,562 + -1.1
3,825,562 + +0.7
3,825,562 + -0.1
3,825,562 + +0.5
3,825,562 + -1.1
3,825,562 + +0.6
3,825,562 + -1.9
3,825,563 - -0.7
3,825,563 - +0.4
3,825,563 - -1.1
3,825,563 - -0.4
3,825,563 - +0.4
3,825,563 - -0.1
3,825,583 + -1.5
3,825,583 + -2.1
3,825,583 + -0.4
3,825,584 - -0.1
3,825,584 - +0.9
3,825,584 - -2.7
3,825,584 - -0.5
3,825,584 - +0.5
3,825,601 + -0.1
3,825,601 + +1.6
3,825,601 + -1.1
3,825,601 + -0.3
3,825,601 + +1.7
3,825,602 - +1.9
3,825,610 + +0.3
3,825,610 + -0.1
3,825,610 + +1.8
3,825,610 + +2.5
3,825,610 + -0.7
3,825,610 + +0.5
3,825,611 - +1.9
3,825,611 - +0.5
3,825,611 - -0.1
3,825,611 - +0.9
3,825,611 - -2.4
3,825,611 - +0.9
3,825,611 - -0.1
3,825,740 + -0.6
3,825,856 + Pf1N1B4_3432 0.22 -1.4
3,825,856 + Pf1N1B4_3432 0.22 -0.9
3,825,857 - Pf1N1B4_3432 0.22 +0.3
3,825,857 - Pf1N1B4_3432 0.22 -2.4
3,825,857 - Pf1N1B4_3432 0.22 -0.5
3,825,857 - Pf1N1B4_3432 0.22 -0.9
3,825,910 + Pf1N1B4_3432 0.30 +0.9
3,825,964 + Pf1N1B4_3432 0.38 -0.1
3,825,964 + Pf1N1B4_3432 0.38 -1.7
3,825,964 + Pf1N1B4_3432 0.38 -1.7
3,825,964 + Pf1N1B4_3432 0.38 -2.1
3,825,965 - Pf1N1B4_3432 0.38 -1.7
3,825,965 - Pf1N1B4_3432 0.38 -0.5
3,825,965 - Pf1N1B4_3432 0.38 -0.1
3,825,965 - Pf1N1B4_3432 0.38 -0.8
3,825,965 - Pf1N1B4_3432 0.38 -2.1
3,825,965 - Pf1N1B4_3432 0.38 -0.1
3,825,965 - Pf1N1B4_3432 0.38 +0.8
3,825,965 - Pf1N1B4_3432 0.38 +0.6
3,825,965 - Pf1N1B4_3432 0.38 -1.1
3,825,965 - Pf1N1B4_3432 0.38 +2.7
3,825,965 - Pf1N1B4_3432 0.38 +1.5
3,825,965 - Pf1N1B4_3432 0.38 +1.0
3,825,965 - Pf1N1B4_3432 0.38 -0.1
3,826,024 + Pf1N1B4_3432 0.47 -1.1
3,826,024 + Pf1N1B4_3432 0.47 -0.2
3,826,024 + Pf1N1B4_3432 0.47 +0.5
3,826,024 + Pf1N1B4_3432 0.47 +0.1
3,826,025 - Pf1N1B4_3432 0.47 -0.1
3,826,025 - Pf1N1B4_3432 0.47 +0.6
3,826,025 - Pf1N1B4_3432 0.47 -0.4
3,826,025 - Pf1N1B4_3432 0.47 +0.9
3,826,306 + Pf1N1B4_3432 0.87 -0.5
3,826,306 + Pf1N1B4_3432 0.87 +0.5
3,826,307 - Pf1N1B4_3432 0.88 -0.3
3,826,307 - Pf1N1B4_3432 0.88 +0.9
3,826,307 - Pf1N1B4_3432 0.88 +0.7
3,826,374 - +1.5
3,826,388 + +2.1
3,826,388 + +0.3
3,826,388 + +0.7
3,826,388 + +2.5
3,826,388 + +0.5
3,826,388 + -0.4
3,826,388 + -0.7
3,826,388 + -1.1
3,826,388 + -0.5
3,826,388 + +0.7
3,826,388 + -0.7
3,826,388 + +1.2
3,826,388 + +1.5
3,826,389 - -0.8
3,826,389 - -0.1
3,826,389 - -0.1
3,826,389 - +0.5
3,826,389 - -1.7
3,826,401 + -0.1
3,826,401 + -1.1
3,826,401 + -0.3
3,826,402 - -0.8
3,826,402 - +1.5
3,826,402 - +0.3
3,826,402 - -0.7
3,826,566 + Pf1N1B4_3433 0.25 +2.2
3,826,566 + Pf1N1B4_3433 0.25 +0.3
3,826,566 + Pf1N1B4_3433 0.25 +1.1
3,826,567 - Pf1N1B4_3433 0.25 -0.6
3,826,567 - Pf1N1B4_3433 0.25 +1.5
3,826,567 - Pf1N1B4_3433 0.25 +0.9
3,826,611 + Pf1N1B4_3433 0.32 +1.9
3,826,611 + Pf1N1B4_3433 0.32 -0.5
3,826,612 - -0.1
3,826,719 + Pf1N1B4_3433 0.47 +1.2
3,826,719 + Pf1N1B4_3433 0.47 -1.9
3,826,719 + Pf1N1B4_3433 0.47 -0.4
3,826,719 + Pf1N1B4_3433 0.47 -1.1
3,826,720 - Pf1N1B4_3433 0.47 -1.7
3,826,720 - Pf1N1B4_3433 0.47 -1.1
3,826,812 + Pf1N1B4_3433 0.61 -1.1
3,826,813 - Pf1N1B4_3433 0.61 +0.5
3,826,813 - Pf1N1B4_3433 0.61 -0.1
3,826,813 - Pf1N1B4_3433 0.61 +1.5
3,826,813 - Pf1N1B4_3433 0.61 +0.1
3,826,861 - Pf1N1B4_3433 0.68 -1.7
3,826,861 - Pf1N1B4_3433 0.68 -1.4
3,826,861 - Pf1N1B4_3433 0.68 +0.7
3,826,861 - Pf1N1B4_3433 0.68 -0.7
3,826,962 + Pf1N1B4_3433 0.82 -0.8
3,826,962 + Pf1N1B4_3433 0.82 +0.7
3,826,962 + Pf1N1B4_3433 0.82 -0.9
3,826,962 + Pf1N1B4_3433 0.82 -0.1
3,826,963 - Pf1N1B4_3433 0.82 -0.1
3,826,963 - Pf1N1B4_3433 0.82 +1.3
3,826,963 - Pf1N1B4_3433 0.82 -0.5
3,826,963 - Pf1N1B4_3433 0.82 +0.1
3,826,963 - Pf1N1B4_3433 0.82 -2.0
3,826,963 - Pf1N1B4_3433 0.82 +1.2
3,826,963 - Pf1N1B4_3433 0.82 -1.1
3,826,980 + Pf1N1B4_3433 0.85 -0.7
3,826,980 + Pf1N1B4_3433 0.85 -0.1
3,826,980 + Pf1N1B4_3433 0.85 -0.1
3,826,980 + Pf1N1B4_3433 0.85 -1.1
3,826,980 + Pf1N1B4_3433 0.85 +1.2
3,826,980 + Pf1N1B4_3433 0.85 -0.1
3,826,981 - Pf1N1B4_3433 0.85 -1.6
3,826,981 - Pf1N1B4_3433 0.85 -2.7
3,826,981 - Pf1N1B4_3433 0.85 +0.3
3,827,001 + Pf1N1B4_3433 0.88 -0.1
3,827,001 + Pf1N1B4_3433 0.88 +1.7
3,827,001 + Pf1N1B4_3433 0.88 -0.1
3,827,001 + Pf1N1B4_3433 0.88 -1.1
3,827,001 + Pf1N1B4_3433 0.88 +0.5
3,827,002 - Pf1N1B4_3433 0.88 -0.1
3,827,002 - Pf1N1B4_3433 0.88 -0.1
3,827,002 - Pf1N1B4_3433 0.88 +0.3
3,827,002 - Pf1N1B4_3433 0.88 +0.8
3,827,002 - Pf1N1B4_3433 0.88 -1.1
3,827,089 - +0.4
3,827,089 - -0.2
3,827,182 + +0.6
3,827,182 + +1.2
3,827,182 + -0.1
3,827,182 + -0.1
3,827,183 - -0.1
3,827,183 - +0.3
3,827,183 - +0.4
3,827,183 - +0.2
3,827,183 - +1.8

Or see this region's nucleotide sequence