Experiment: Cephalothin 2.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2708 and Pf1N1B4_2709 are separated by 15 nucleotides Pf1N1B4_2709 and Pf1N1B4_2710 are separated by 5 nucleotides Pf1N1B4_2710 and Pf1N1B4_2711 overlap by 8 nucleotides
Pf1N1B4_2708 - Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE, at 3,045,617 to 3,047,140
_2708
Pf1N1B4_2709 - Magnesium and cobalt efflux protein CorC, at 3,047,156 to 3,047,995
_2709
Pf1N1B4_2710 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 3,048,001 to 3,048,495
_2710
Pf1N1B4_2711 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 3,048,488 to 3,049,504
_2711
Position (kb)
3047
3048 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3047.168 kb on - strand at 3047.168 kb on - strand at 3047.168 kb on - strand at 3047.168 kb on - strand at 3047.404 kb on - strand, within Pf1N1B4_2709 at 3047.404 kb on - strand, within Pf1N1B4_2709 at 3047.404 kb on - strand, within Pf1N1B4_2709 at 3047.404 kb on - strand, within Pf1N1B4_2709 at 3047.404 kb on - strand, within Pf1N1B4_2709 at 3047.404 kb on - strand, within Pf1N1B4_2709 at 3047.404 kb on - strand, within Pf1N1B4_2709 at 3047.807 kb on + strand, within Pf1N1B4_2709 at 3048.023 kb on - strand at 3048.838 kb on - strand, within Pf1N1B4_2711 at 3048.838 kb on - strand, within Pf1N1B4_2711 at 3048.889 kb on - strand, within Pf1N1B4_2711
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 2.5 mg/ml remove 3,047,168 - -0.8 3,047,168 - -0.2 3,047,168 - -0.9 3,047,168 - -0.8 3,047,404 - Pf1N1B4_2709 0.30 -2.1 3,047,404 - Pf1N1B4_2709 0.30 -1.8 3,047,404 - Pf1N1B4_2709 0.30 +0.1 3,047,404 - Pf1N1B4_2709 0.30 -0.3 3,047,404 - Pf1N1B4_2709 0.30 -0.8 3,047,404 - Pf1N1B4_2709 0.30 -1.1 3,047,404 - Pf1N1B4_2709 0.30 -1.1 3,047,807 + Pf1N1B4_2709 0.78 -0.8 3,048,023 - +0.2 3,048,838 - Pf1N1B4_2711 0.34 +0.6 3,048,838 - Pf1N1B4_2711 0.34 +2.0 3,048,889 - Pf1N1B4_2711 0.39 -0.8
Or see this region's nucleotide sequence