Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14320

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,187,734	+		LRK54_RS14315	0.20	-1.7
3,187,734	+		LRK54_RS14315	0.20	+1.6
3,187,735	-		LRK54_RS14315	0.20	-0.8
3,187,735	-		LRK54_RS14315	0.20	-0.9
3,187,735	-		LRK54_RS14315	0.20	+0.3
3,187,735	-		LRK54_RS14315	0.20	-1.0
3,187,735	-		LRK54_RS14315	0.20	+0.1
3,187,735	-		LRK54_RS14315	0.20	+0.4
3,187,738	+		LRK54_RS14315	0.20	+0.6
3,187,738	+		LRK54_RS14315	0.20	+0.8
3,187,738	+		LRK54_RS14315	0.20	-2.9
3,187,738	+		LRK54_RS14315	0.20	-0.4
3,187,738	+		LRK54_RS14315	0.20	-0.1
3,187,738	+		LRK54_RS14315	0.20	-1.4
3,187,738	+		LRK54_RS14315	0.20	+1.3
3,187,738	+		LRK54_RS14315	0.20	-0.5
3,187,738	+		LRK54_RS14315	0.20	+0.2
3,187,738	+		LRK54_RS14315	0.20	-1.1
3,187,738	+		LRK54_RS14315	0.20	-1.6
3,187,738	+		LRK54_RS14315	0.20	-0.6
3,187,738	+		LRK54_RS14315	0.20	-0.7
3,187,738	+		LRK54_RS14315	0.20	-0.4
3,187,738	+		LRK54_RS14315	0.20	+0.8
3,187,738	+		LRK54_RS14315	0.20	+1.6
3,187,738	+		LRK54_RS14315	0.20	-1.4
3,187,738	+		LRK54_RS14315	0.20	-0.5
3,187,738	+		LRK54_RS14315	0.20	-1.0
3,187,738	+		LRK54_RS14315	0.20	+0.2
3,187,738	+		LRK54_RS14315	0.20	-0.4
3,187,738	+		LRK54_RS14315	0.20	+0.1
3,187,738	+		LRK54_RS14315	0.20	-0.0
3,187,738	+		LRK54_RS14315	0.20	+1.6
3,187,738	+		LRK54_RS14315	0.20	+0.6
3,187,738	+		LRK54_RS14315	0.20	+0.3
3,187,738	+		LRK54_RS14315	0.20	-0.2
3,187,738	+		LRK54_RS14315	0.20	-0.4
3,187,738	+		LRK54_RS14315	0.20	-0.3
3,187,738	+		LRK54_RS14315	0.20	+2.3
3,187,738	+		LRK54_RS14315	0.20	-0.0
3,187,738	+		LRK54_RS14315	0.20	-0.9
3,187,738	+		LRK54_RS14315	0.20	+0.5
3,187,738	+		LRK54_RS14315	0.20	-0.4
3,187,738	+		LRK54_RS14315	0.20	-0.0
3,187,738	+		LRK54_RS14315	0.20	-0.0
3,187,738	+		LRK54_RS14315	0.20	-0.3
3,187,738	+		LRK54_RS14315	0.20	+1.2
3,187,738	+		LRK54_RS14315	0.20	-0.0
3,187,738	+		LRK54_RS14315	0.20	-0.2
3,187,738	+		LRK54_RS14315	0.20	-0.2
3,187,738	+		LRK54_RS14315	0.20	-0.7
3,187,738	+		LRK54_RS14315	0.20	-0.1
3,187,738	+		LRK54_RS14315	0.20	-0.2
3,187,738	+		LRK54_RS14315	0.20	+0.4
3,187,738	+		LRK54_RS14315	0.20	-0.7
3,187,738	+		LRK54_RS14315	0.20	+0.6
3,187,739	-		LRK54_RS14315	0.20	-0.3
3,187,739	-		LRK54_RS14315	0.20	-0.4
3,187,739	-		LRK54_RS14315	0.20	-0.1
3,187,739	-		LRK54_RS14315	0.20	-0.0
3,187,739	-		LRK54_RS14315	0.20	+1.2
3,187,739	-		LRK54_RS14315	0.20	-1.0
3,187,739	-		LRK54_RS14315	0.20	-0.5
3,187,739	-		LRK54_RS14315	0.20	-0.3
3,187,739	-		LRK54_RS14315	0.20	-1.6
3,187,739	-		LRK54_RS14315	0.20	+0.1
3,187,739	-		LRK54_RS14315	0.20	-1.4
3,187,739	-		LRK54_RS14315	0.20	-1.2
3,187,739	-		LRK54_RS14315	0.20	-0.0
3,187,739	-		LRK54_RS14315	0.20	-0.7
3,187,739	-		LRK54_RS14315	0.20	+0.3
3,187,739	-		LRK54_RS14315	0.20	-2.5
3,187,739	-		LRK54_RS14315	0.20	-1.3
3,187,739	-		LRK54_RS14315	0.20	+1.6
3,187,739	-		LRK54_RS14315	0.20	+1.0
3,187,739	-		LRK54_RS14315	0.20	+0.6
3,187,739	-		LRK54_RS14315	0.20	-1.2
3,187,739	-		LRK54_RS14315	0.20	-1.2
3,187,739	-		LRK54_RS14315	0.20	+0.6
3,187,739	-		LRK54_RS14315	0.20	+2.6
3,187,739	-		LRK54_RS14315	0.20	-2.1
3,187,739	-		LRK54_RS14315	0.20	-0.4
3,187,739	-		LRK54_RS14315	0.20	+1.6
3,187,739	-		LRK54_RS14315	0.20	+0.2
3,187,739	-		LRK54_RS14315	0.20	-1.0
3,187,739	-		LRK54_RS14315	0.20	-0.4
3,187,739	-		LRK54_RS14315	0.20	-0.3
3,187,739	-		LRK54_RS14315	0.20	-0.4
3,187,739	-		LRK54_RS14315	0.20	+1.6
3,187,739	-		LRK54_RS14315	0.20	-0.6
3,187,739	-		LRK54_RS14315	0.20	-1.2
3,188,181	+		LRK54_RS14315	0.61	+0.1
3,188,181	+		LRK54_RS14315	0.61	-0.5
3,188,181	+		LRK54_RS14315	0.61	-2.2
3,188,181	+		LRK54_RS14315	0.61	-0.9
3,188,181	+		LRK54_RS14315	0.61	-0.0
3,188,181	+		LRK54_RS14315	0.61	+0.2
3,188,181	+		LRK54_RS14315	0.61	+0.7
3,188,181	+		LRK54_RS14315	0.61	+0.2
3,188,181	+		LRK54_RS14315	0.61	-1.0
3,188,181	+		LRK54_RS14315	0.61	+0.9
3,188,182	-		LRK54_RS14315	0.61	-0.9
3,188,182	-		LRK54_RS14315	0.61	-0.4
3,188,182	-		LRK54_RS14315	0.61	+0.6
3,188,182	-		LRK54_RS14315	0.61	+0.1
3,188,182	-		LRK54_RS14315	0.61	-0.0
3,188,182	-		LRK54_RS14315	0.61	-0.9
3,188,182	-		LRK54_RS14315	0.61	+0.1
3,188,182	-		LRK54_RS14315	0.61	-1.9
3,188,182	-		LRK54_RS14315	0.61	+1.1
3,188,182	-		LRK54_RS14315	0.61	-0.6
3,188,182	-		LRK54_RS14315	0.61	+1.0
3,188,448	+		LRK54_RS14315	0.86	-1.0
3,188,448	+		LRK54_RS14315	0.86	-1.4
3,188,448	+		LRK54_RS14315	0.86	+1.0
3,188,448	+		LRK54_RS14315	0.86	-0.4
3,188,448	+		LRK54_RS14315	0.86	+0.1
3,188,448	+		LRK54_RS14315	0.86	-0.0
3,188,448	-		LRK54_RS14315	0.86	-0.5
3,188,449	-		LRK54_RS14315	0.86	+0.5
3,188,449	-		LRK54_RS14315	0.86	-0.4
3,188,449	-		LRK54_RS14315	0.86	-1.1
3,188,449	-		LRK54_RS14315	0.86	-3.1
3,188,449	-		LRK54_RS14315	0.86	-0.5
3,188,449	-		LRK54_RS14315	0.86	+1.2
3,188,449	-		LRK54_RS14315	0.86	-2.5
3,188,466	+		LRK54_RS14315	0.87	+1.1
3,188,467	-		LRK54_RS14315	0.87	-2.4
3,188,467	-		LRK54_RS14315	0.87	+0.1
3,188,467	-		LRK54_RS14315	0.87	-0.0
3,188,654	+				-0.7
3,188,655	-				-1.2
3,188,655	-				-0.8
3,188,674	+				-0.5
3,188,674	+				+1.6
3,188,674	+				+1.2
3,188,674	+				-0.7
3,188,674	+				-0.2
3,188,675	-				-0.6
3,188,675	-				+0.4
3,188,675	-				+0.1
3,188,675	-				+0.6
3,188,675	-				-1.1
3,188,675	-				-1.4
3,188,675	-				-1.0
3,188,675	-				-0.2
3,188,821	+				+1.4
3,188,821	+				-1.6
3,188,821	+				+0.3
3,188,822	-				-1.0
3,188,822	-				+0.2
3,188,822	-				+0.4
3,189,142	+		LRK54_RS14320	0.17	+1.2
3,189,142	+		LRK54_RS14320	0.17	+0.9
3,189,235	+		LRK54_RS14320	0.21	+0.6
3,189,303	+		LRK54_RS14320	0.24	+0.8
3,189,303	+		LRK54_RS14320	0.24	+0.2
3,189,303	+		LRK54_RS14320	0.24	+0.6
3,189,304	-		LRK54_RS14320	0.24	-0.4
3,189,304	-		LRK54_RS14320	0.24	-0.0
3,189,304	-		LRK54_RS14320	0.24	+0.6
3,189,304	-		LRK54_RS14320	0.24	-0.5
3,189,304	-		LRK54_RS14320	0.24	-0.0
3,189,313	+		LRK54_RS14320	0.25	+0.1
3,189,314	-		LRK54_RS14320	0.25	+0.0
3,189,638	-		LRK54_RS14320	0.38	-0.2
3,189,638	-		LRK54_RS14320	0.38	-1.3
3,189,638	-		LRK54_RS14320	0.38	-0.1
3,189,871	+		LRK54_RS14320	0.48	-1.4
3,189,871	+		LRK54_RS14320	0.48	+0.6
3,189,871	+		LRK54_RS14320	0.48	+0.3
3,189,871	+		LRK54_RS14320	0.48	+0.4
3,189,872	-		LRK54_RS14320	0.48	+0.2
3,189,872	-		LRK54_RS14320	0.48	-0.5
3,189,872	-		LRK54_RS14320	0.48	+1.6
3,190,102	+		LRK54_RS14320	0.57	+0.9
3,190,102	+		LRK54_RS14320	0.57	-0.7
3,190,102	+		LRK54_RS14320	0.57	-0.1
3,190,103	-		LRK54_RS14320	0.57	-0.5
3,190,103	-		LRK54_RS14320	0.57	-1.0
3,190,103	-		LRK54_RS14320	0.57	-0.7
3,190,103	-		LRK54_RS14320	0.57	+0.3
3,190,103	-		LRK54_RS14320	0.57	+1.2
3,190,103	-		LRK54_RS14320	0.57	+0.1
3,190,594	+		LRK54_RS14320	0.78	+0.9
3,190,594	+		LRK54_RS14320	0.78	-0.9
3,190,594	+		LRK54_RS14320	0.78	+0.9
3,190,594	+		LRK54_RS14320	0.78	-0.6
3,190,594	+		LRK54_RS14320	0.78	+0.7
3,190,594	+		LRK54_RS14320	0.78	+0.4
3,190,594	+		LRK54_RS14320	0.78	+1.2
3,190,594	+		LRK54_RS14320	0.78	-0.1
3,190,594	+		LRK54_RS14320	0.78	-0.3
3,190,594	+		LRK54_RS14320	0.78	-0.6
3,190,594	+		LRK54_RS14320	0.78	+1.0
3,190,595	-		LRK54_RS14320	0.78	+0.2
3,190,595	-		LRK54_RS14320	0.78	+1.6
3,190,595	-		LRK54_RS14320	0.78	+0.7
3,190,595	-		LRK54_RS14320	0.78	+0.1
3,190,595	-		LRK54_RS14320	0.78	+1.3
3,190,595	-		LRK54_RS14320	0.78	-0.6
3,190,595	-		LRK54_RS14320	0.78	+0.6
3,190,595	-		LRK54_RS14320	0.78	+1.4
3,190,595	-		LRK54_RS14320	0.78	+0.3
3,190,595	-		LRK54_RS14320	0.78	+0.6
3,190,595	-		LRK54_RS14320	0.78	-1.2
3,190,595	-		LRK54_RS14320	0.78	-0.4
3,190,663	+		LRK54_RS14320	0.80	-0.5
3,190,663	+		LRK54_RS14320	0.80	+1.3
3,190,663	+		LRK54_RS14320	0.80	+0.3
3,190,663	+		LRK54_RS14320	0.80	+0.3
3,190,663	+		LRK54_RS14320	0.80	+0.1
3,190,663	+		LRK54_RS14320	0.80	+0.2
3,190,663	+		LRK54_RS14320	0.80	-0.8
3,190,663	+		LRK54_RS14320	0.80	+0.8
3,190,664	-		LRK54_RS14320	0.80	+1.9
3,190,664	-		LRK54_RS14320	0.80	-0.5
3,190,664	-		LRK54_RS14320	0.80	+0.5
3,190,664	-		LRK54_RS14320	0.80	-0.7
3,190,664	-		LRK54_RS14320	0.80	+0.3
3,190,664	-		LRK54_RS14320	0.80	-0.3
3,190,664	-		LRK54_RS14320	0.80	-0.4
3,190,664	-		LRK54_RS14320	0.80	-0.3
3,190,759	+		LRK54_RS14320	0.84	+0.3
3,190,760	-		LRK54_RS14320	0.84	+1.0
3,190,760	-		LRK54_RS14320	0.84	-0.6
3,190,906	+				+0.5
3,190,906	+				+1.7
3,190,906	+				+0.7
3,190,906	+				-1.6
3,190,906	+				-0.6
3,190,906	+				-0.1
3,190,906	+				+0.4
3,190,907	-				-0.7
3,190,907	-				+0.7
3,190,907	-				+1.2
3,190,907	-				-1.9
3,190,918	+				-0.5
3,190,918	+				+0.4
3,190,918	+				-0.7
3,190,918	+				+0.2
3,190,918	+				-0.9
3,190,918	+				-1.2
3,190,918	+				+1.4
3,190,918	+				+0.5
3,190,918	+				-0.2
3,190,918	+				+0.6
3,190,918	+				+1.6
3,190,918	+				+0.6
3,190,918	+				-1.0
3,190,918	+				+1.3
3,190,919	-				-0.3
3,190,919	-				+0.4
3,190,919	-				+0.6
3,190,919	-				+0.3
3,190,919	-				-0.6
3,190,919	-				+0.7
3,190,919	-				+0.6
3,190,919	-				-1.0
3,190,919	-				-0.8
3,190,919	-				+0.4
3,190,919	-				+0.7
3,190,919	-				+0.5
3,190,919	-				-0.9
3,190,919	-				-0.2
3,190,919	-				+2.3
3,191,050	+				+1.4
3,191,050	+				+0.5
3,191,050	+				-0.5
3,191,050	+				+1.1
3,191,050	+				+0.0
3,191,050	+				-0.4
3,191,050	+				-0.2
3,191,050	+				-0.0
3,191,050	+				-0.4
3,191,050	+				+1.0
3,191,050	+				-0.2
3,191,051	-				+0.9
3,191,051	-				+0.9
3,191,051	-				+0.0
3,191,051	-				-0.6
3,191,051	-				-0.0
3,191,051	-				+0.3
3,191,051	-				-0.3
3,191,051	-				-0.0
3,191,051	-				+0.8
3,191,051	-				-0.5
3,191,051	-				+0.7
3,191,051	-				-0.6
3,191,166	+				-0.6
3,191,166	+				+0.4
3,191,167	-				-0.3
3,191,199	+				+0.6
3,191,199	+				-0.5
3,191,199	+				+1.6
3,191,217	+		LRK54_RS14325	0.11	+1.1
3,191,217	+		LRK54_RS14325	0.11	-0.7
3,191,217	+		LRK54_RS14325	0.11	+0.5
3,191,217	+		LRK54_RS14325	0.11	-0.2
3,191,217	+		LRK54_RS14325	0.11	+0.3
3,191,217	+		LRK54_RS14325	0.11	+0.8
3,191,217	+		LRK54_RS14325	0.11	+1.6
3,191,217	+		LRK54_RS14325	0.11	+0.5
3,191,217	+		LRK54_RS14325	0.11	-0.0
3,191,217	+		LRK54_RS14325	0.11	-0.2
3,191,218	-		LRK54_RS14325	0.11	-0.1
3,191,218	-		LRK54_RS14325	0.11	-0.2
3,191,218	-		LRK54_RS14325	0.11	+0.8
3,191,218	-		LRK54_RS14325	0.11	-0.5
3,191,218	-		LRK54_RS14325	0.11	+0.9
3,191,218	-		LRK54_RS14325	0.11	-1.4
3,191,218	-		LRK54_RS14325	0.11	+3.9
3,191,218	-		LRK54_RS14325	0.11	+0.7
3,191,218	-		LRK54_RS14325	0.11	-0.2
3,191,218	-		LRK54_RS14325	0.11	-1.0
3,191,218	-		LRK54_RS14325	0.11	-0.4
3,191,218	-		LRK54_RS14325	0.11	+1.9
3,191,218	-		LRK54_RS14325	0.11	-0.3
3,191,218	-		LRK54_RS14325	0.11	+0.8
3,191,218	-		LRK54_RS14325	0.11	-1.0
3,191,244	+		LRK54_RS14325	0.15	+1.3
3,191,244	+		LRK54_RS14325	0.15	-0.9
3,191,244	+		LRK54_RS14325	0.15	-0.8
3,191,245	-		LRK54_RS14325	0.15	-0.6
3,191,245	-		LRK54_RS14325	0.15	+0.3
3,191,245	-		LRK54_RS14325	0.15	-0.2
3,191,642	+		LRK54_RS14325	0.66	+1.4
3,191,643	+		LRK54_RS14325	0.66	+1.6
3,191,643	+		LRK54_RS14325	0.66	-0.4
3,191,643	+		LRK54_RS14325	0.66	-0.4
3,191,643	+		LRK54_RS14325	0.66	-0.2
3,191,643	+		LRK54_RS14325	0.66	+0.4
3,191,643	+		LRK54_RS14325	0.66	+0.3
3,191,643	+		LRK54_RS14325	0.66	-0.1
3,191,643	+		LRK54_RS14325	0.66	+0.6
3,191,643	+		LRK54_RS14325	0.66	+0.5
3,191,643	+		LRK54_RS14325	0.66	-1.4
3,191,643	+		LRK54_RS14325	0.66	-1.6
3,191,643	+		LRK54_RS14325	0.66	+1.8
3,191,643	+		LRK54_RS14325	0.66	-0.4
3,191,643	+		LRK54_RS14325	0.66	-0.3
3,191,643	+		LRK54_RS14325	0.66	+0.5
3,191,643	+		LRK54_RS14325	0.66	-1.4
3,191,643	+		LRK54_RS14325	0.66	-0.6
3,191,643	+		LRK54_RS14325	0.66	-1.4
3,191,643	+		LRK54_RS14325	0.66	-1.2
3,191,643	+		LRK54_RS14325	0.66	-1.1
3,191,643	+		LRK54_RS14325	0.66	-0.2
3,191,643	+		LRK54_RS14325	0.66	+0.1
3,191,644	-		LRK54_RS14325	0.66	+0.4
3,191,644	-		LRK54_RS14325	0.66	-0.4
3,191,644	-		LRK54_RS14325	0.66	+4.2
3,191,644	-		LRK54_RS14325	0.66	+1.0
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3,191,644	-		LRK54_RS14325	0.66	-0.9
3,191,644	-		LRK54_RS14325	0.66	-0.3
3,191,644	-		LRK54_RS14325	0.66	-0.8
3,191,644	-		LRK54_RS14325	0.66	+1.0
3,191,644	-		LRK54_RS14325	0.66	-0.4
3,191,644	-		LRK54_RS14325	0.66	-1.1
3,191,644	-		LRK54_RS14325	0.66	-0.1
3,191,644	-		LRK54_RS14325	0.66	-1.1
3,191,644	-		LRK54_RS14325	0.66	+0.7
3,191,644	-		LRK54_RS14325	0.66	-0.7
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3,191,644	-		LRK54_RS14325	0.66	-0.1
3,191,644	-		LRK54_RS14325	0.66	+0.2
3,191,644	-		LRK54_RS14325	0.66	+1.0
3,191,644	-		LRK54_RS14325	0.66	-0.9
3,191,644	-		LRK54_RS14325	0.66	+2.6
3,191,644	-		LRK54_RS14325	0.66	-0.1
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3,191,796	+		LRK54_RS14325	0.86	+0.2
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3,191,796	+		LRK54_RS14325	0.86	-0.9
3,191,796	+		LRK54_RS14325	0.86	+0.9
3,191,796	+		LRK54_RS14325	0.86	+0.2
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3,191,797	-		LRK54_RS14325	0.86	-0.4
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3,191,859	+				+0.4
3,191,859	+				-0.7
3,191,859	+				-0.6
3,191,859	+				+0.4
3,191,859	+				+0.1
3,191,859	+				-0.6
3,191,859	+				-0.7
3,191,859	+				+0.9
3,191,860	-				-0.2
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3,191,860	-				-0.7
3,191,860	-				-0.4
3,191,860	-				-0.0
3,191,860	-				-0.3
3,191,860	-				-2.2
3,192,024	-				-0.1
3,192,059	+				+0.5
3,192,059	+				+0.2
3,192,059	+				+1.2
3,192,059	+				+0.2
3,192,059	+				+1.6
3,192,059	+				-0.6
3,192,059	+				-0.5
3,192,060	-				+0.3
3,192,060	-				+0.2
3,192,060	-				+0.1
3,192,060	-				-0.1
3,192,060	-				-0.9
3,192,060	-				+0.4
3,192,060	-				+0.4
3,192,060	-				+0.6
3,192,060	-				+0.6
3,192,060	-				+0.4
3,192,060	-				+0.7
3,192,060	-				+0.7
3,192,060	-				-1.6
3,192,061	+				+1.3
3,192,061	+				+0.4
3,192,061	+				-0.2
3,192,062	-				-0.0
3,192,062	-				-0.2
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3,192,086	+				+2.0
3,192,087	-				-0.4
3,192,087	-				+0.3
3,192,087	-				+1.6
3,192,087	-				+0.7
3,192,087	-				-2.1