Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03775 and LRK54_RS03780 are separated by 96 nucleotides LRK54_RS03780 and LRK54_RS03785 are separated by 79 nucleotides LRK54_RS03785 and LRK54_RS03790 are separated by 254 nucleotides LRK54_RS03790 and LRK54_RS03795 are separated by 201 nucleotides
LRK54_RS03775: LRK54_RS03775 - hypothetical protein, at 796,562 to 796,843
_RS03775
LRK54_RS03780: LRK54_RS03780 - hypothetical protein, at 796,940 to 797,416
_RS03780
LRK54_RS03785: LRK54_RS03785 - hypothetical protein, at 797,496 to 797,696
_RS03785
LRK54_RS03790: LRK54_RS03790 - hypothetical protein, at 797,951 to 798,406
_RS03790
LRK54_RS03795: LRK54_RS03795 - thioesterase family protein, at 798,608 to 799,393
_RS03795
Position (kb) 797
798 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 796.501 kb on - strand at 796.563 kb on + strand at 796.564 kb on - strand at 796.597 kb on + strand, within LRK54_RS03775 at 796.635 kb on - strand, within LRK54_RS03775 at 796.692 kb on + strand, within LRK54_RS03775 at 796.693 kb on - strand, within LRK54_RS03775 at 796.693 kb on - strand, within LRK54_RS03775 at 796.693 kb on - strand, within LRK54_RS03775 at 796.696 kb on + strand, within LRK54_RS03775 at 796.754 kb on + strand, within LRK54_RS03775 at 796.754 kb on + strand, within LRK54_RS03775 at 796.758 kb on + strand, within LRK54_RS03775 at 796.759 kb on - strand, within LRK54_RS03775 at 796.759 kb on - strand, within LRK54_RS03775 at 796.781 kb on + strand, within LRK54_RS03775 at 796.782 kb on - strand, within LRK54_RS03775 at 796.814 kb on + strand, within LRK54_RS03775 at 796.814 kb on + strand, within LRK54_RS03775 at 796.814 kb on + strand, within LRK54_RS03775 at 796.815 kb on - strand at 796.815 kb on - strand at 796.815 kb on - strand at 796.821 kb on - strand at 796.821 kb on - strand at 796.858 kb on + strand at 796.859 kb on - strand at 796.904 kb on + strand at 796.938 kb on - strand at 796.941 kb on + strand at 796.949 kb on + strand at 796.949 kb on + strand at 796.949 kb on + strand at 796.989 kb on + strand, within LRK54_RS03780 at 796.989 kb on + strand, within LRK54_RS03780 at 796.990 kb on - strand, within LRK54_RS03780 at 796.990 kb on - strand, within LRK54_RS03780 at 796.990 kb on - strand, within LRK54_RS03780 at 796.990 kb on - strand, within LRK54_RS03780 at 797.048 kb on + strand, within LRK54_RS03780 at 797.057 kb on + strand, within LRK54_RS03780 at 797.057 kb on + strand, within LRK54_RS03780 at 797.105 kb on + strand, within LRK54_RS03780 at 797.105 kb on + strand, within LRK54_RS03780 at 797.105 kb on + strand, within LRK54_RS03780 at 797.105 kb on + strand, within LRK54_RS03780 at 797.106 kb on - strand, within LRK54_RS03780 at 797.151 kb on - strand, within LRK54_RS03780 at 797.151 kb on - strand, within LRK54_RS03780 at 797.189 kb on + strand, within LRK54_RS03780 at 797.249 kb on - strand, within LRK54_RS03780 at 797.249 kb on - strand, within LRK54_RS03780 at 797.249 kb on - strand, within LRK54_RS03780 at 797.318 kb on - strand, within LRK54_RS03780 at 797.324 kb on - strand, within LRK54_RS03780 at 797.384 kb on + strand at 797.384 kb on + strand at 797.385 kb on - strand at 797.446 kb on + strand at 797.446 kb on + strand at 797.446 kb on + strand at 797.446 kb on + strand at 797.481 kb on + strand at 797.481 kb on + strand at 797.481 kb on + strand at 797.481 kb on + strand at 797.481 kb on + strand at 797.482 kb on - strand at 797.482 kb on - strand at 797.482 kb on - strand at 797.482 kb on - strand at 797.498 kb on - strand at 797.532 kb on - strand, within LRK54_RS03785 at 797.532 kb on - strand, within LRK54_RS03785 at 797.588 kb on + strand, within LRK54_RS03785 at 797.589 kb on - strand, within LRK54_RS03785 at 797.589 kb on - strand, within LRK54_RS03785 at 797.589 kb on - strand, within LRK54_RS03785 at 797.589 kb on - strand, within LRK54_RS03785 at 797.596 kb on + strand, within LRK54_RS03785 at 797.597 kb on + strand, within LRK54_RS03785 at 797.597 kb on + strand, within LRK54_RS03785 at 797.597 kb on + strand, within LRK54_RS03785 at 797.597 kb on + strand, within LRK54_RS03785 at 797.598 kb on - strand, within LRK54_RS03785 at 797.598 kb on - strand, within LRK54_RS03785 at 797.768 kb on + strand at 797.768 kb on + strand at 797.769 kb on - strand at 797.769 kb on - strand at 797.769 kb on - strand at 797.830 kb on + strand at 797.830 kb on + strand at 797.831 kb on - strand at 797.831 kb on - strand at 797.831 kb on - strand at 797.831 kb on - strand at 797.831 kb on - strand at 797.857 kb on + strand at 797.857 kb on + strand at 797.857 kb on + strand at 797.857 kb on + strand at 797.858 kb on - strand at 797.875 kb on + strand at 797.876 kb on - strand at 797.946 kb on - strand at 797.946 kb on - strand at 797.946 kb on - strand at 798.007 kb on + strand, within LRK54_RS03790 at 798.007 kb on + strand, within LRK54_RS03790 at 798.008 kb on - strand, within LRK54_RS03790 at 798.008 kb on - strand, within LRK54_RS03790 at 798.015 kb on + strand, within LRK54_RS03790 at 798.015 kb on + strand, within LRK54_RS03790 at 798.015 kb on + strand, within LRK54_RS03790 at 798.015 kb on + strand, within LRK54_RS03790 at 798.015 kb on + strand, within LRK54_RS03790 at 798.015 kb on + strand, within LRK54_RS03790 at 798.059 kb on + strand, within LRK54_RS03790 at 798.060 kb on - strand, within LRK54_RS03790 at 798.060 kb on - strand, within LRK54_RS03790 at 798.060 kb on - strand, within LRK54_RS03790 at 798.096 kb on + strand, within LRK54_RS03790 at 798.096 kb on + strand, within LRK54_RS03790 at 798.154 kb on + strand, within LRK54_RS03790 at 798.175 kb on + strand, within LRK54_RS03790 at 798.175 kb on + strand, within LRK54_RS03790 at 798.175 kb on + strand, within LRK54_RS03790 at 798.176 kb on - strand, within LRK54_RS03790 at 798.183 kb on + strand, within LRK54_RS03790 at 798.183 kb on + strand, within LRK54_RS03790 at 798.183 kb on + strand, within LRK54_RS03790 at 798.183 kb on + strand, within LRK54_RS03790 at 798.184 kb on - strand, within LRK54_RS03790 at 798.184 kb on - strand, within LRK54_RS03790 at 798.184 kb on - strand, within LRK54_RS03790 at 798.184 kb on - strand, within LRK54_RS03790 at 798.184 kb on - strand, within LRK54_RS03790 at 798.189 kb on + strand, within LRK54_RS03790 at 798.189 kb on + strand, within LRK54_RS03790 at 798.189 kb on + strand, within LRK54_RS03790 at 798.189 kb on + strand, within LRK54_RS03790 at 798.189 kb on + strand, within LRK54_RS03790 at 798.189 kb on + strand, within LRK54_RS03790 at 798.189 kb on + strand, within LRK54_RS03790 at 798.190 kb on - strand, within LRK54_RS03790 at 798.190 kb on - strand, within LRK54_RS03790 at 798.190 kb on - strand, within LRK54_RS03790 at 798.190 kb on - strand, within LRK54_RS03790 at 798.190 kb on - strand, within LRK54_RS03790 at 798.268 kb on + strand, within LRK54_RS03790 at 798.268 kb on + strand, within LRK54_RS03790 at 798.268 kb on + strand, within LRK54_RS03790 at 798.269 kb on - strand, within LRK54_RS03790 at 798.269 kb on - strand, within LRK54_RS03790 at 798.269 kb on - strand, within LRK54_RS03790 at 798.287 kb on - strand, within LRK54_RS03790 at 798.287 kb on - strand, within LRK54_RS03790 at 798.325 kb on + strand, within LRK54_RS03790 at 798.326 kb on - strand, within LRK54_RS03790 at 798.326 kb on - strand, within LRK54_RS03790 at 798.336 kb on + strand, within LRK54_RS03790 at 798.336 kb on + strand, within LRK54_RS03790 at 798.336 kb on + strand, within LRK54_RS03790 at 798.336 kb on + strand, within LRK54_RS03790 at 798.336 kb on + strand, within LRK54_RS03790 at 798.336 kb on + strand, within LRK54_RS03790 at 798.336 kb on + strand, within LRK54_RS03790 at 798.337 kb on - strand, within LRK54_RS03790 at 798.337 kb on - strand, within LRK54_RS03790 at 798.337 kb on - strand, within LRK54_RS03790 at 798.337 kb on - strand, within LRK54_RS03790 at 798.361 kb on + strand at 798.421 kb on - strand at 798.421 kb on - strand at 798.424 kb on + strand at 798.424 kb on + strand at 798.425 kb on - strand at 798.425 kb on - strand at 798.443 kb on + strand at 798.443 kb on + strand at 798.444 kb on - strand at 798.444 kb on - strand at 798.444 kb on - strand at 798.444 kb on - strand at 798.457 kb on - strand at 798.471 kb on + strand at 798.471 kb on + strand at 798.471 kb on + strand at 798.472 kb on - strand at 798.472 kb on - strand at 798.473 kb on + strand at 798.473 kb on + strand at 798.473 kb on + strand at 798.474 kb on - strand at 798.474 kb on - strand at 798.529 kb on + strand at 798.530 kb on - strand at 798.530 kb on - strand at 798.530 kb on - strand at 798.542 kb on + strand at 798.542 kb on + strand at 798.542 kb on + strand at 798.542 kb on + strand at 798.542 kb on + strand at 798.542 kb on + strand at 798.542 kb on + strand at 798.542 kb on + strand at 798.542 kb on + strand at 798.543 kb on - strand at 798.543 kb on - strand at 798.543 kb on - strand at 798.543 kb on - strand at 798.543 kb on - strand at 798.586 kb on + strand at 798.586 kb on + strand at 798.586 kb on + strand at 798.586 kb on + strand at 798.587 kb on - strand at 798.587 kb on - strand at 798.587 kb on - strand at 798.587 kb on - strand at 798.587 kb on - strand at 798.587 kb on - strand at 798.587 kb on - strand at 798.588 kb on + strand at 798.588 kb on + strand at 798.588 kb on + strand at 798.588 kb on + strand at 798.588 kb on + strand at 798.588 kb on + strand at 798.588 kb on + strand at 798.588 kb on + strand at 798.588 kb on + strand at 798.588 kb on + strand at 798.588 kb on + strand at 798.589 kb on - strand at 798.589 kb on - strand at 798.589 kb on - strand at 798.589 kb on - strand at 798.589 kb on - strand at 798.600 kb on + strand at 798.600 kb on + strand at 798.600 kb on + strand at 798.600 kb on + strand at 798.600 kb on + strand at 798.600 kb on + strand at 798.600 kb on + strand at 798.601 kb on - strand at 798.601 kb on - strand at 798.601 kb on - strand at 798.601 kb on - strand at 798.601 kb on - strand at 798.601 kb on - strand at 798.690 kb on + strand, within LRK54_RS03795 at 798.690 kb on + strand, within LRK54_RS03795 at 798.690 kb on + strand, within LRK54_RS03795 at 798.690 kb on + strand, within LRK54_RS03795 at 798.690 kb on + strand, within LRK54_RS03795 at 798.690 kb on + strand, within LRK54_RS03795 at 798.691 kb on - strand, within LRK54_RS03795 at 798.691 kb on - strand, within LRK54_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 796,501 - -1.7 796,563 + -1.6 796,564 - +0.1 796,597 + LRK54_RS03775 0.12 -0.4 796,635 - LRK54_RS03775 0.26 +0.7 796,692 + LRK54_RS03775 0.46 +0.9 796,693 - LRK54_RS03775 0.46 +1.6 796,693 - LRK54_RS03775 0.46 -1.2 796,693 - LRK54_RS03775 0.46 -2.4 796,696 + LRK54_RS03775 0.48 -0.8 796,754 + LRK54_RS03775 0.68 +0.6 796,754 + LRK54_RS03775 0.68 -1.1 796,758 + LRK54_RS03775 0.70 +0.8 796,759 - LRK54_RS03775 0.70 -1.6 796,759 - LRK54_RS03775 0.70 +0.6 796,781 + LRK54_RS03775 0.78 -0.9 796,782 - LRK54_RS03775 0.78 -1.2 796,814 + LRK54_RS03775 0.89 -1.1 796,814 + LRK54_RS03775 0.89 -1.0 796,814 + LRK54_RS03775 0.89 -1.6 796,815 - -3.0 796,815 - +0.0 796,815 - +0.7 796,821 - +0.3 796,821 - -0.7 796,858 + -3.0 796,859 - -0.7 796,904 + -0.6 796,938 - -0.4 796,941 + -2.0 796,949 + -1.0 796,949 + -2.4 796,949 + -0.1 796,989 + LRK54_RS03780 0.10 +0.3 796,989 + LRK54_RS03780 0.10 -0.3 796,990 - LRK54_RS03780 0.10 -0.3 796,990 - LRK54_RS03780 0.10 -0.7 796,990 - LRK54_RS03780 0.10 -0.4 796,990 - LRK54_RS03780 0.10 -2.0 797,048 + LRK54_RS03780 0.23 -0.9 797,057 + LRK54_RS03780 0.25 -0.9 797,057 + LRK54_RS03780 0.25 -0.8 797,105 + LRK54_RS03780 0.35 -0.1 797,105 + LRK54_RS03780 0.35 -0.3 797,105 + LRK54_RS03780 0.35 +0.8 797,105 + LRK54_RS03780 0.35 +1.6 797,106 - LRK54_RS03780 0.35 -0.0 797,151 - LRK54_RS03780 0.44 +0.5 797,151 - LRK54_RS03780 0.44 +0.1 797,189 + LRK54_RS03780 0.52 -1.4 797,249 - LRK54_RS03780 0.65 +0.6 797,249 - LRK54_RS03780 0.65 -1.0 797,249 - LRK54_RS03780 0.65 -1.6 797,318 - LRK54_RS03780 0.79 -1.0 797,324 - LRK54_RS03780 0.81 +1.0 797,384 + +0.2 797,384 + -0.0 797,385 - -1.9 797,446 + +0.6 797,446 + -0.4 797,446 + -0.1 797,446 + -1.2 797,481 + -1.4 797,481 + -1.0 797,481 + -1.7 797,481 + -1.4 797,481 + +0.8 797,482 - -1.0 797,482 - +0.6 797,482 - -0.7 797,482 - +0.4 797,498 - -0.4 797,532 - LRK54_RS03785 0.18 -0.2 797,532 - LRK54_RS03785 0.18 -0.7 797,588 + LRK54_RS03785 0.46 +0.0 797,589 - LRK54_RS03785 0.46 -0.7 797,589 - LRK54_RS03785 0.46 -1.6 797,589 - LRK54_RS03785 0.46 -1.8 797,589 - LRK54_RS03785 0.46 +0.7 797,596 + LRK54_RS03785 0.50 -2.2 797,597 + LRK54_RS03785 0.50 +0.4 797,597 + LRK54_RS03785 0.50 -0.7 797,597 + LRK54_RS03785 0.50 -1.1 797,597 + LRK54_RS03785 0.50 +0.6 797,598 - LRK54_RS03785 0.51 -0.3 797,598 - LRK54_RS03785 0.51 -1.7 797,768 + +0.7 797,768 + -0.3 797,769 - +2.2 797,769 - -1.0 797,769 - +1.3 797,830 + +0.0 797,830 + -0.2 797,831 - -0.7 797,831 - -0.8 797,831 - -0.9 797,831 - -0.4 797,831 - -1.3 797,857 + -0.4 797,857 + -0.1 797,857 + +1.0 797,857 + -0.0 797,858 - +0.8 797,875 + -0.2 797,876 - -0.5 797,946 - -1.4 797,946 - -0.2 797,946 - -1.1 798,007 + LRK54_RS03790 0.12 -1.3 798,007 + LRK54_RS03790 0.12 -0.5 798,008 - LRK54_RS03790 0.12 -0.0 798,008 - LRK54_RS03790 0.12 -0.4 798,015 + LRK54_RS03790 0.14 -4.2 798,015 + LRK54_RS03790 0.14 -0.2 798,015 + LRK54_RS03790 0.14 +1.6 798,015 + LRK54_RS03790 0.14 -0.0 798,015 + LRK54_RS03790 0.14 -0.3 798,015 + LRK54_RS03790 0.14 +0.0 798,059 + LRK54_RS03790 0.24 -0.5 798,060 - LRK54_RS03790 0.24 +0.1 798,060 - LRK54_RS03790 0.24 -0.0 798,060 - LRK54_RS03790 0.24 -1.4 798,096 + LRK54_RS03790 0.32 -0.6 798,096 + LRK54_RS03790 0.32 -1.6 798,154 + LRK54_RS03790 0.45 -1.3 798,175 + LRK54_RS03790 0.49 -1.9 798,175 + LRK54_RS03790 0.49 +0.3 798,175 + LRK54_RS03790 0.49 -0.7 798,176 - LRK54_RS03790 0.49 -2.1 798,183 + LRK54_RS03790 0.51 -1.9 798,183 + LRK54_RS03790 0.51 -0.9 798,183 + LRK54_RS03790 0.51 -0.4 798,183 + LRK54_RS03790 0.51 -1.1 798,184 - LRK54_RS03790 0.51 -0.3 798,184 - LRK54_RS03790 0.51 -0.7 798,184 - LRK54_RS03790 0.51 -1.1 798,184 - LRK54_RS03790 0.51 -0.3 798,184 - LRK54_RS03790 0.51 -1.2 798,189 + LRK54_RS03790 0.52 -0.5 798,189 + LRK54_RS03790 0.52 -1.7 798,189 + LRK54_RS03790 0.52 -0.4 798,189 + LRK54_RS03790 0.52 -0.0 798,189 + LRK54_RS03790 0.52 +0.3 798,189 + LRK54_RS03790 0.52 -1.6 798,189 + LRK54_RS03790 0.52 -0.0 798,190 - LRK54_RS03790 0.52 -1.7 798,190 - LRK54_RS03790 0.52 -1.4 798,190 - LRK54_RS03790 0.52 +0.3 798,190 - LRK54_RS03790 0.52 -0.8 798,190 - LRK54_RS03790 0.52 -0.2 798,268 + LRK54_RS03790 0.70 -0.9 798,268 + LRK54_RS03790 0.70 -1.4 798,268 + LRK54_RS03790 0.70 +1.0 798,269 - LRK54_RS03790 0.70 -1.1 798,269 - LRK54_RS03790 0.70 -0.7 798,269 - LRK54_RS03790 0.70 +1.9 798,287 - LRK54_RS03790 0.74 -0.9 798,287 - LRK54_RS03790 0.74 -0.0 798,325 + LRK54_RS03790 0.82 -0.9 798,326 - LRK54_RS03790 0.82 -2.3 798,326 - LRK54_RS03790 0.82 -1.6 798,336 + LRK54_RS03790 0.84 +1.7 798,336 + LRK54_RS03790 0.84 -2.1 798,336 + LRK54_RS03790 0.84 +1.0 798,336 + LRK54_RS03790 0.84 +0.4 798,336 + LRK54_RS03790 0.84 -0.2 798,336 + LRK54_RS03790 0.84 +0.4 798,336 + LRK54_RS03790 0.84 -0.0 798,337 - LRK54_RS03790 0.85 -1.4 798,337 - LRK54_RS03790 0.85 -2.0 798,337 - LRK54_RS03790 0.85 -2.1 798,337 - LRK54_RS03790 0.85 -1.0 798,361 + -0.0 798,421 - -0.8 798,421 - -0.4 798,424 + +0.4 798,424 + -0.6 798,425 - +1.0 798,425 - +0.5 798,443 + +0.6 798,443 + -0.3 798,444 - +1.6 798,444 - -0.4 798,444 - +1.2 798,444 - -0.4 798,457 - +0.2 798,471 + +0.2 798,471 + -2.2 798,471 + -0.1 798,472 - +0.5 798,472 - +0.3 798,473 + +0.4 798,473 + +0.1 798,473 + -1.7 798,474 - -0.9 798,474 - -1.1 798,529 + +0.3 798,530 - -1.9 798,530 - -0.8 798,530 - +0.9 798,542 + -0.6 798,542 + +0.3 798,542 + +0.6 798,542 + -0.7 798,542 + -1.0 798,542 + +0.8 798,542 + -1.4 798,542 + -0.3 798,542 + -1.6 798,543 - -0.4 798,543 - -0.2 798,543 - +1.0 798,543 - +0.0 798,543 - +2.3 798,586 + -0.2 798,586 + +0.6 798,586 + -0.0 798,586 + -0.0 798,587 - +2.0 798,587 - -0.0 798,587 - -0.5 798,587 - +0.1 798,587 - -1.0 798,587 - +1.6 798,587 - -1.4 798,588 + -1.0 798,588 + -0.2 798,588 + +0.1 798,588 + +1.7 798,588 + +0.6 798,588 + -0.8 798,588 + -0.0 798,588 + -1.4 798,588 + +0.2 798,588 + +0.1 798,588 + -2.2 798,589 - -0.2 798,589 - +0.1 798,589 - -0.9 798,589 - +0.8 798,589 - -1.2 798,600 + -0.6 798,600 + +0.6 798,600 + -1.2 798,600 + -0.9 798,600 + -0.1 798,600 + -0.6 798,600 + -0.1 798,601 - +0.5 798,601 - -0.6 798,601 - -0.9 798,601 - -0.7 798,601 - +1.0 798,601 - -0.7 798,690 + LRK54_RS03795 0.10 +0.1 798,690 + LRK54_RS03795 0.10 -0.3 798,690 + LRK54_RS03795 0.10 -0.2 798,690 + LRK54_RS03795 0.10 -0.4 798,690 + LRK54_RS03795 0.10 +0.1 798,690 + LRK54_RS03795 0.10 +0.7 798,691 - LRK54_RS03795 0.11 -0.2 798,691 - LRK54_RS03795 0.11 +1.6
Or see this region's nucleotide sequence