Experiment: Ceftazidime 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_5004 and Ac3H11_5005 overlap by 39 nucleotides Ac3H11_5005 and Ac3H11_5006 are separated by 312 nucleotides
Ac3H11_5004 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 174,695 to 176,593
_5004
Ac3H11_5005 - hypothetical protein, at 176,555 to 176,671
_5005
Ac3H11_5006 - Mobile element protein, at 176,984 to 178,015
_5006
Position (kb) 176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.560 kb on + strand, within Ac3H11_5004 at 175.734 kb on + strand, within Ac3H11_5004 at 175.734 kb on + strand, within Ac3H11_5004 at 175.734 kb on + strand, within Ac3H11_5004 at 175.734 kb on + strand, within Ac3H11_5004 at 175.734 kb on + strand, within Ac3H11_5004 at 175.734 kb on + strand, within Ac3H11_5004 at 175.734 kb on + strand, within Ac3H11_5004 at 175.735 kb on - strand, within Ac3H11_5004 at 175.735 kb on - strand, within Ac3H11_5004 at 175.735 kb on - strand, within Ac3H11_5004 at 175.735 kb on - strand, within Ac3H11_5004 at 175.735 kb on - strand, within Ac3H11_5004 at 175.740 kb on + strand, within Ac3H11_5004 at 175.740 kb on + strand, within Ac3H11_5004 at 175.740 kb on + strand, within Ac3H11_5004 at 175.740 kb on + strand, within Ac3H11_5004 at 175.740 kb on + strand, within Ac3H11_5004 at 175.740 kb on + strand, within Ac3H11_5004 at 175.740 kb on + strand, within Ac3H11_5004 at 175.741 kb on - strand, within Ac3H11_5004 at 175.784 kb on - strand, within Ac3H11_5004 at 175.784 kb on - strand, within Ac3H11_5004 at 175.815 kb on + strand, within Ac3H11_5004 at 175.815 kb on + strand, within Ac3H11_5004 at 175.816 kb on - strand, within Ac3H11_5004 at 175.816 kb on - strand, within Ac3H11_5004 at 175.816 kb on - strand, within Ac3H11_5004 at 175.816 kb on - strand, within Ac3H11_5004 at 175.980 kb on + strand, within Ac3H11_5004 at 176.021 kb on - strand, within Ac3H11_5004 at 176.232 kb on + strand, within Ac3H11_5004 at 176.232 kb on + strand, within Ac3H11_5004 at 176.232 kb on + strand, within Ac3H11_5004 at 176.232 kb on + strand, within Ac3H11_5004 at 176.233 kb on - strand, within Ac3H11_5004 at 176.233 kb on - strand, within Ac3H11_5004 at 176.233 kb on - strand, within Ac3H11_5004 at 176.233 kb on - strand, within Ac3H11_5004 at 176.233 kb on - strand, within Ac3H11_5004 at 176.233 kb on - strand, within Ac3H11_5004 at 176.331 kb on + strand, within Ac3H11_5004 at 176.331 kb on + strand, within Ac3H11_5004 at 176.331 kb on + strand, within Ac3H11_5004 at 176.331 kb on + strand, within Ac3H11_5004 at 176.332 kb on - strand, within Ac3H11_5004 at 176.332 kb on - strand, within Ac3H11_5004 at 176.385 kb on + strand, within Ac3H11_5004 at 176.386 kb on - strand, within Ac3H11_5004 at 176.386 kb on - strand, within Ac3H11_5004 at 176.386 kb on - strand, within Ac3H11_5004 at 176.386 kb on - strand, within Ac3H11_5004 at 176.386 kb on - strand, within Ac3H11_5004 at 176.421 kb on + strand at 176.421 kb on + strand at 176.427 kb on + strand at 176.427 kb on + strand at 176.427 kb on + strand at 176.427 kb on + strand at 176.428 kb on - strand at 176.428 kb on - strand at 176.428 kb on - strand at 176.428 kb on - strand at 176.428 kb on - strand at 176.439 kb on + strand at 176.439 kb on + strand at 176.439 kb on + strand at 176.439 kb on + strand at 176.439 kb on + strand at 176.440 kb on - strand at 176.440 kb on - strand at 176.440 kb on - strand at 176.440 kb on - strand at 176.440 kb on - strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.448 kb on + strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.449 kb on - strand at 176.563 kb on - strand at 176.563 kb on - strand at 176.691 kb on - strand at 176.763 kb on + strand at 176.763 kb on + strand at 176.763 kb on + strand at 176.763 kb on + strand at 176.763 kb on + strand at 176.763 kb on + strand at 176.763 kb on + strand at 176.764 kb on - strand at 176.764 kb on - strand at 176.764 kb on - strand at 176.764 kb on - strand at 176.764 kb on - strand at 176.764 kb on - strand at 176.846 kb on - strand at 176.846 kb on - strand at 176.849 kb on + strand at 176.849 kb on + strand at 176.849 kb on + strand at 176.850 kb on - strand at 176.850 kb on - strand at 176.863 kb on - strand at 176.905 kb on + strand at 176.905 kb on + strand at 176.906 kb on - strand at 176.906 kb on - strand at 176.913 kb on + strand at 176.913 kb on + strand at 176.913 kb on + strand at 176.914 kb on - strand at 176.914 kb on - strand at 176.914 kb on - strand at 177.008 kb on - strand at 177.419 kb on + strand, within Ac3H11_5006 at 177.419 kb on + strand, within Ac3H11_5006 at 177.419 kb on + strand, within Ac3H11_5006 at 177.419 kb on + strand, within Ac3H11_5006 at 177.419 kb on + strand, within Ac3H11_5006 at 177.420 kb on - strand, within Ac3H11_5006 at 177.420 kb on - strand, within Ac3H11_5006 at 177.420 kb on - strand, within Ac3H11_5006 at 177.420 kb on - strand, within Ac3H11_5006 at 177.474 kb on + strand, within Ac3H11_5006 at 177.474 kb on + strand, within Ac3H11_5006 at 177.474 kb on + strand, within Ac3H11_5006 at 177.474 kb on + strand, within Ac3H11_5006 at 177.474 kb on + strand, within Ac3H11_5006 at 177.474 kb on + strand, within Ac3H11_5006 at 177.474 kb on + strand, within Ac3H11_5006 at 177.474 kb on + strand, within Ac3H11_5006 at 177.475 kb on - strand, within Ac3H11_5006 at 177.475 kb on - strand, within Ac3H11_5006 at 177.475 kb on - strand, within Ac3H11_5006 at 177.545 kb on + strand, within Ac3H11_5006 at 177.545 kb on + strand, within Ac3H11_5006 at 177.545 kb on + strand, within Ac3H11_5006 at 177.545 kb on + strand, within Ac3H11_5006 at 177.545 kb on + strand, within Ac3H11_5006 at 177.545 kb on + strand, within Ac3H11_5006 at 177.545 kb on + strand, within Ac3H11_5006 at 177.545 kb on + strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.546 kb on - strand, within Ac3H11_5006 at 177.615 kb on + strand, within Ac3H11_5006 at 177.615 kb on + strand, within Ac3H11_5006 at 177.615 kb on + strand, within Ac3H11_5006 at 177.616 kb on - strand, within Ac3H11_5006 at 177.616 kb on - strand, within Ac3H11_5006
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.01 mg/ml remove 175,560 + Ac3H11_5004 0.46 -1.0 175,734 + Ac3H11_5004 0.55 +1.9 175,734 + Ac3H11_5004 0.55 +0.0 175,734 + Ac3H11_5004 0.55 +0.1 175,734 + Ac3H11_5004 0.55 -0.1 175,734 + Ac3H11_5004 0.55 +0.1 175,734 + Ac3H11_5004 0.55 +0.6 175,734 + Ac3H11_5004 0.55 -1.0 175,735 - Ac3H11_5004 0.55 +0.5 175,735 - Ac3H11_5004 0.55 +0.2 175,735 - Ac3H11_5004 0.55 +0.6 175,735 - Ac3H11_5004 0.55 +0.5 175,735 - Ac3H11_5004 0.55 +1.8 175,740 + Ac3H11_5004 0.55 -1.3 175,740 + Ac3H11_5004 0.55 -0.9 175,740 + Ac3H11_5004 0.55 +0.9 175,740 + Ac3H11_5004 0.55 +0.1 175,740 + Ac3H11_5004 0.55 -1.1 175,740 + Ac3H11_5004 0.55 +0.7 175,740 + Ac3H11_5004 0.55 +0.1 175,741 - Ac3H11_5004 0.55 -0.4 175,784 - Ac3H11_5004 0.57 -0.4 175,784 - Ac3H11_5004 0.57 -0.6 175,815 + Ac3H11_5004 0.59 +0.5 175,815 + Ac3H11_5004 0.59 +0.1 175,816 - Ac3H11_5004 0.59 +1.1 175,816 - Ac3H11_5004 0.59 +0.3 175,816 - Ac3H11_5004 0.59 -0.2 175,816 - Ac3H11_5004 0.59 +0.1 175,980 + Ac3H11_5004 0.68 -0.4 176,021 - Ac3H11_5004 0.70 -1.0 176,232 + Ac3H11_5004 0.81 +0.5 176,232 + Ac3H11_5004 0.81 +0.4 176,232 + Ac3H11_5004 0.81 +1.6 176,232 + Ac3H11_5004 0.81 -0.6 176,233 - Ac3H11_5004 0.81 +0.6 176,233 - Ac3H11_5004 0.81 -0.2 176,233 - Ac3H11_5004 0.81 -0.1 176,233 - Ac3H11_5004 0.81 -0.4 176,233 - Ac3H11_5004 0.81 +1.1 176,233 - Ac3H11_5004 0.81 -0.6 176,331 + Ac3H11_5004 0.86 -0.1 176,331 + Ac3H11_5004 0.86 +0.1 176,331 + Ac3H11_5004 0.86 -0.6 176,331 + Ac3H11_5004 0.86 +1.2 176,332 - Ac3H11_5004 0.86 -0.3 176,332 - Ac3H11_5004 0.86 +0.7 176,385 + Ac3H11_5004 0.89 +0.7 176,386 - Ac3H11_5004 0.89 +0.4 176,386 - Ac3H11_5004 0.89 -0.8 176,386 - Ac3H11_5004 0.89 +0.2 176,386 - Ac3H11_5004 0.89 -0.8 176,386 - Ac3H11_5004 0.89 +0.2 176,421 + +2.1 176,421 + -0.3 176,427 + -0.3 176,427 + +0.1 176,427 + +0.5 176,427 + -0.9 176,428 - +1.4 176,428 - +1.0 176,428 - -0.7 176,428 - +0.9 176,428 - +0.1 176,439 + +0.2 176,439 + +0.2 176,439 + -0.7 176,439 + +0.7 176,439 + -0.1 176,440 - +0.5 176,440 - +0.4 176,440 - +0.0 176,440 - +0.2 176,440 - +0.1 176,448 + +0.1 176,448 + -2.2 176,448 + +0.8 176,448 + +0.3 176,448 + -1.2 176,448 + +0.2 176,448 + -0.2 176,448 + -1.1 176,448 + -0.2 176,448 + -0.2 176,448 + +0.3 176,448 + -0.1 176,448 + -0.1 176,448 + -0.1 176,449 - -0.4 176,449 - +0.0 176,449 - -0.8 176,449 - +0.1 176,449 - +0.7 176,449 - -0.0 176,449 - -1.0 176,449 - +0.1 176,449 - -0.9 176,449 - -0.2 176,449 - -0.1 176,449 - -0.2 176,449 - +0.3 176,449 - -1.0 176,563 - +0.4 176,563 - +0.4 176,691 - -0.9 176,763 + -0.5 176,763 + +0.8 176,763 + +0.1 176,763 + -0.2 176,763 + -0.8 176,763 + +0.6 176,763 + +0.4 176,764 - +0.4 176,764 - -0.4 176,764 - -0.4 176,764 - -0.3 176,764 - -0.0 176,764 - +0.4 176,846 - -0.2 176,846 - +1.0 176,849 + -0.7 176,849 + -0.3 176,849 + -0.2 176,850 - +0.7 176,850 - +0.1 176,863 - -0.2 176,905 + -0.0 176,905 + +0.0 176,906 - +0.6 176,906 - -0.0 176,913 + +0.3 176,913 + +0.5 176,913 + -0.9 176,914 - -0.6 176,914 - -0.8 176,914 - +0.3 177,008 - -0.5 177,419 + Ac3H11_5006 0.42 -3.0 177,419 + Ac3H11_5006 0.42 -0.0 177,419 + Ac3H11_5006 0.42 +1.6 177,419 + Ac3H11_5006 0.42 +0.4 177,419 + Ac3H11_5006 0.42 -1.0 177,420 - Ac3H11_5006 0.42 +0.9 177,420 - Ac3H11_5006 0.42 +0.1 177,420 - Ac3H11_5006 0.42 +0.9 177,420 - Ac3H11_5006 0.42 -0.2 177,474 + Ac3H11_5006 0.47 +0.7 177,474 + Ac3H11_5006 0.47 +0.1 177,474 + Ac3H11_5006 0.47 +1.1 177,474 + Ac3H11_5006 0.47 +0.1 177,474 + Ac3H11_5006 0.47 +0.6 177,474 + Ac3H11_5006 0.47 -0.7 177,474 + Ac3H11_5006 0.47 -0.5 177,474 + Ac3H11_5006 0.47 -0.1 177,475 - Ac3H11_5006 0.48 +0.2 177,475 - Ac3H11_5006 0.48 +0.5 177,475 - Ac3H11_5006 0.48 +1.4 177,545 + Ac3H11_5006 0.54 -1.4 177,545 + Ac3H11_5006 0.54 -0.9 177,545 + Ac3H11_5006 0.54 -0.7 177,545 + Ac3H11_5006 0.54 +0.1 177,545 + Ac3H11_5006 0.54 -0.1 177,545 + Ac3H11_5006 0.54 +0.4 177,545 + Ac3H11_5006 0.54 -0.4 177,545 + Ac3H11_5006 0.54 -0.2 177,546 - Ac3H11_5006 0.54 -0.1 177,546 - Ac3H11_5006 0.54 +2.7 177,546 - Ac3H11_5006 0.54 -1.2 177,546 - Ac3H11_5006 0.54 -1.2 177,546 - Ac3H11_5006 0.54 +0.8 177,546 - Ac3H11_5006 0.54 +0.5 177,546 - Ac3H11_5006 0.54 -0.1 177,546 - Ac3H11_5006 0.54 +1.1 177,546 - Ac3H11_5006 0.54 -0.5 177,546 - Ac3H11_5006 0.54 -0.2 177,546 - Ac3H11_5006 0.54 -0.1 177,615 + Ac3H11_5006 0.61 +0.2 177,615 + Ac3H11_5006 0.61 +0.6 177,615 + Ac3H11_5006 0.61 +0.5 177,616 - Ac3H11_5006 0.61 -0.4 177,616 - Ac3H11_5006 0.61 +0.3
Or see this region's nucleotide sequence