Experiment: Ceftazidime 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_378 and Ac3H11_379 overlap by 10 nucleotides Ac3H11_379 and Ac3H11_380 are separated by 244 nucleotides Ac3H11_380 and Ac3H11_381 are separated by 521 nucleotides
Ac3H11_378 - hypothetical protein, at 56,179 to 56,418
_378
Ac3H11_379 - hypothetical protein, at 56,409 to 56,615
_379
Ac3H11_380 - hypothetical protein, at 56,860 to 57,036
_380
Ac3H11_381 - Integrase, at 57,558 to 58,805
_381
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 56.038 kb on + strand at 56.038 kb on + strand at 56.038 kb on + strand at 56.039 kb on - strand at 56.039 kb on - strand at 56.039 kb on - strand at 56.039 kb on - strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.617 kb on - strand at 56.617 kb on - strand at 56.746 kb on + strand at 56.785 kb on + strand at 56.786 kb on - strand at 56.795 kb on - strand at 56.795 kb on - strand at 56.825 kb on + strand at 56.825 kb on + strand at 56.826 kb on - strand at 56.826 kb on - strand at 56.826 kb on - strand at 56.862 kb on - strand at 56.897 kb on + strand, within Ac3H11_380 at 56.897 kb on + strand, within Ac3H11_380 at 56.898 kb on - strand, within Ac3H11_380 at 56.898 kb on - strand, within Ac3H11_380 at 56.905 kb on + strand, within Ac3H11_380 at 56.906 kb on - strand, within Ac3H11_380 at 56.993 kb on + strand, within Ac3H11_380 at 57.049 kb on + strand at 57.049 kb on + strand at 57.050 kb on - strand at 57.050 kb on - strand at 57.050 kb on - strand at 57.103 kb on + strand at 57.103 kb on + strand at 57.103 kb on + strand at 57.144 kb on + strand at 57.144 kb on + strand at 57.145 kb on - strand at 57.145 kb on - strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.170 kb on + strand at 57.171 kb on - strand at 57.195 kb on - strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.274 kb on - strand at 57.274 kb on - strand at 57.613 kb on + strand at 57.614 kb on - strand at 57.614 kb on - strand at 57.670 kb on + strand at 57.670 kb on + strand at 57.671 kb on - strand at 57.671 kb on - strand at 57.757 kb on - strand, within Ac3H11_381 at 58.018 kb on - strand, within Ac3H11_381 at 58.018 kb on - strand, within Ac3H11_381
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.01 mg/ml remove 56,038 + -0.0 56,038 + +1.6 56,038 + +0.2 56,039 - -0.9 56,039 - -0.3 56,039 - -1.6 56,039 - -0.8 56,405 + +0.1 56,405 + -1.3 56,405 + +1.4 56,405 + +0.1 56,405 + +0.7 56,616 + -0.4 56,616 + +0.3 56,616 + +0.1 56,616 + -1.3 56,616 + -1.5 56,616 + -0.3 56,616 + +0.3 56,617 - +0.7 56,617 - +0.1 56,746 + -0.2 56,785 + +1.7 56,786 - -1.3 56,795 - +0.3 56,795 - -0.3 56,825 + +0.7 56,825 + +1.0 56,826 - +0.8 56,826 - +0.7 56,826 - +0.1 56,862 - -0.7 56,897 + Ac3H11_380 0.21 +0.2 56,897 + Ac3H11_380 0.21 +1.6 56,898 - Ac3H11_380 0.21 +3.5 56,898 - Ac3H11_380 0.21 +0.4 56,905 + Ac3H11_380 0.25 +0.2 56,906 - Ac3H11_380 0.26 +0.3 56,993 + Ac3H11_380 0.75 -0.2 57,049 + -0.5 57,049 + +0.7 57,050 - +1.5 57,050 - +0.3 57,050 - +0.4 57,103 + +2.3 57,103 + -1.4 57,103 + +0.1 57,144 + -0.5 57,144 + +0.1 57,145 - +0.1 57,145 - +0.3 57,148 + +1.0 57,148 + -0.3 57,148 + -1.0 57,148 + -1.4 57,148 + -0.2 57,148 + +1.3 57,148 + -0.5 57,148 + -0.2 57,148 + +0.7 57,148 + -0.3 57,148 + +0.7 57,148 + -0.3 57,149 - +0.4 57,149 - +0.3 57,149 - -1.3 57,149 - -0.1 57,149 - -1.1 57,149 - +0.3 57,149 - -0.7 57,149 - +0.3 57,149 - +0.3 57,149 - -0.2 57,170 + +0.9 57,171 - +0.5 57,195 - -0.1 57,273 + +0.5 57,273 + +0.5 57,273 + +0.6 57,273 + -1.8 57,274 - -0.3 57,274 - -1.0 57,613 + +0.8 57,614 - +0.8 57,614 - -2.4 57,670 + -0.6 57,670 + -0.1 57,671 - +0.1 57,671 - -0.2 57,757 - Ac3H11_381 0.16 -2.0 58,018 - Ac3H11_381 0.37 -0.5 58,018 - Ac3H11_381 0.37 +0.0
Or see this region's nucleotide sequence