Experiment: Ceftazidime 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3514 and Ac3H11_3515 are separated by 44 nucleotides Ac3H11_3515 and Ac3H11_3516 are separated by 28 nucleotides Ac3H11_3516 and Ac3H11_3517 are separated by 265 nucleotides
Ac3H11_3514 - Antibiotic biosynthesis monooxygenase, at 61,067 to 61,369
_3514
Ac3H11_3515 - putative transcriptional regulator, LysR family, at 61,414 to 62,292
_3515
Ac3H11_3516 - hypothetical protein, at 62,321 to 62,725
_3516
Ac3H11_3517 - Transcriptional regulator, LysR family, at 62,991 to 63,893
_3517
Position (kb) 62
63 Strain fitness (log2 ratio) -1
0
1
2 at 61.832 kb on + strand, within Ac3H11_3515 at 61.832 kb on + strand, within Ac3H11_3515 at 61.832 kb on + strand, within Ac3H11_3515 at 61.833 kb on - strand, within Ac3H11_3515 at 61.833 kb on - strand, within Ac3H11_3515 at 61.833 kb on - strand, within Ac3H11_3515 at 61.833 kb on - strand, within Ac3H11_3515 at 62.093 kb on + strand, within Ac3H11_3515 at 62.094 kb on - strand, within Ac3H11_3515 at 62.094 kb on - strand, within Ac3H11_3515 at 62.250 kb on - strand at 62.265 kb on - strand at 62.265 kb on - strand at 62.358 kb on + strand at 62.359 kb on - strand at 62.359 kb on - strand at 62.359 kb on - strand at 62.359 kb on - strand at 62.359 kb on - strand at 62.423 kb on + strand, within Ac3H11_3516 at 62.424 kb on - strand, within Ac3H11_3516 at 62.424 kb on - strand, within Ac3H11_3516 at 62.424 kb on - strand, within Ac3H11_3516 at 62.424 kb on - strand, within Ac3H11_3516 at 62.430 kb on + strand, within Ac3H11_3516 at 62.717 kb on - strand at 62.756 kb on + strand at 62.757 kb on - strand at 62.757 kb on - strand at 62.795 kb on + strand at 62.795 kb on + strand at 62.796 kb on - strand at 62.796 kb on - strand at 62.796 kb on - strand at 63.023 kb on - strand at 63.023 kb on - strand at 63.023 kb on - strand at 63.406 kb on + strand, within Ac3H11_3517 at 63.406 kb on + strand, within Ac3H11_3517 at 63.407 kb on - strand, within Ac3H11_3517 at 63.407 kb on - strand, within Ac3H11_3517 at 63.407 kb on - strand, within Ac3H11_3517
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.01 mg/ml remove 61,832 + Ac3H11_3515 0.48 +0.1 61,832 + Ac3H11_3515 0.48 -0.1 61,832 + Ac3H11_3515 0.48 +0.4 61,833 - Ac3H11_3515 0.48 -0.1 61,833 - Ac3H11_3515 0.48 -0.1 61,833 - Ac3H11_3515 0.48 -0.0 61,833 - Ac3H11_3515 0.48 -0.4 62,093 + Ac3H11_3515 0.77 -0.5 62,094 - Ac3H11_3515 0.77 -0.7 62,094 - Ac3H11_3515 0.77 +0.3 62,250 - +0.3 62,265 - -0.2 62,265 - +1.5 62,358 + -0.8 62,359 - +0.9 62,359 - +1.8 62,359 - -0.0 62,359 - +0.5 62,359 - +0.1 62,423 + Ac3H11_3516 0.25 -0.4 62,424 - Ac3H11_3516 0.25 +1.1 62,424 - Ac3H11_3516 0.25 +0.3 62,424 - Ac3H11_3516 0.25 +0.9 62,424 - Ac3H11_3516 0.25 -0.7 62,430 + Ac3H11_3516 0.27 -0.9 62,717 - -0.6 62,756 + +0.1 62,757 - +0.2 62,757 - -0.5 62,795 + +0.1 62,795 + +0.1 62,796 - -1.0 62,796 - +0.9 62,796 - +0.3 63,023 - +0.4 63,023 - +0.6 63,023 - +0.0 63,406 + Ac3H11_3517 0.46 +0.4 63,406 + Ac3H11_3517 0.46 +0.6 63,407 - Ac3H11_3517 0.46 +0.4 63,407 - Ac3H11_3517 0.46 +0.8 63,407 - Ac3H11_3517 0.46 +0.3
Or see this region's nucleotide sequence