Experiment: Ceftazidime 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_322 and Ac3H11_323 are separated by 129 nucleotides Ac3H11_323 and Ac3H11_324 are separated by 15 nucleotides Ac3H11_324 and Ac3H11_325 are separated by 460 nucleotides
Ac3H11_322 - Transcriptional regulatory protein, at 145,345 to 146,541
_322
Ac3H11_323 - hypothetical protein, at 146,671 to 146,787
_323
Ac3H11_324 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 146,803 to 149,469
_324
Ac3H11_325 - hypothetical protein, at 149,930 to 150,055
_325
Position (kb) 146
147
148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 145.822 kb on + strand, within Ac3H11_322 at 145.822 kb on + strand, within Ac3H11_322 at 145.822 kb on + strand, within Ac3H11_322 at 145.940 kb on + strand, within Ac3H11_322 at 145.940 kb on + strand, within Ac3H11_322 at 145.940 kb on + strand, within Ac3H11_322 at 145.940 kb on + strand, within Ac3H11_322 at 145.941 kb on - strand, within Ac3H11_322 at 145.941 kb on - strand, within Ac3H11_322 at 146.384 kb on - strand, within Ac3H11_322 at 146.544 kb on + strand at 146.544 kb on + strand at 146.544 kb on + strand at 146.544 kb on + strand at 146.544 kb on + strand at 146.594 kb on + strand at 146.595 kb on - strand at 147.035 kb on - strand at 147.035 kb on - strand at 147.889 kb on + strand, within Ac3H11_324 at 147.890 kb on - strand, within Ac3H11_324 at 147.944 kb on - strand, within Ac3H11_324 at 147.944 kb on - strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.147 kb on + strand, within Ac3H11_324 at 148.148 kb on - strand, within Ac3H11_324 at 148.148 kb on - strand, within Ac3H11_324 at 148.148 kb on - strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.417 kb on + strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.418 kb on - strand, within Ac3H11_324 at 148.623 kb on + strand, within Ac3H11_324 at 148.624 kb on - strand, within Ac3H11_324 at 148.624 kb on - strand, within Ac3H11_324 at 148.624 kb on - strand, within Ac3H11_324 at 148.669 kb on + strand, within Ac3H11_324 at 148.669 kb on + strand, within Ac3H11_324 at 148.670 kb on - strand, within Ac3H11_324 at 148.670 kb on - strand, within Ac3H11_324 at 148.670 kb on - strand, within Ac3H11_324 at 148.670 kb on - strand, within Ac3H11_324 at 148.696 kb on + strand, within Ac3H11_324 at 148.697 kb on - strand, within Ac3H11_324 at 148.697 kb on - strand, within Ac3H11_324 at 148.697 kb on - strand, within Ac3H11_324 at 148.697 kb on - strand, within Ac3H11_324 at 148.697 kb on - strand, within Ac3H11_324 at 148.811 kb on - strand, within Ac3H11_324 at 149.077 kb on + strand, within Ac3H11_324 at 149.077 kb on + strand, within Ac3H11_324 at 149.077 kb on + strand, within Ac3H11_324 at 149.077 kb on + strand, within Ac3H11_324 at 149.078 kb on - strand, within Ac3H11_324 at 149.078 kb on - strand, within Ac3H11_324 at 149.078 kb on - strand, within Ac3H11_324 at 149.078 kb on - strand, within Ac3H11_324 at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.369 kb on + strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.370 kb on - strand at 149.467 kb on + strand at 149.467 kb on + strand at 149.468 kb on - strand at 149.468 kb on - strand at 149.468 kb on - strand at 149.496 kb on + strand at 149.496 kb on + strand at 149.496 kb on + strand at 149.496 kb on + strand at 149.496 kb on + strand at 149.496 kb on + strand at 149.497 kb on - strand at 149.497 kb on - strand at 149.497 kb on - strand at 149.497 kb on - strand at 149.502 kb on + strand at 149.502 kb on + strand at 149.502 kb on + strand at 149.503 kb on - strand at 149.503 kb on - strand at 149.570 kb on + strand at 149.570 kb on + strand at 149.570 kb on + strand at 149.570 kb on + strand at 149.571 kb on - strand at 149.571 kb on - strand at 149.571 kb on - strand at 149.571 kb on - strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.636 kb on + strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.637 kb on - strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.640 kb on + strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.641 kb on - strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.727 kb on + strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.728 kb on - strand at 149.739 kb on + strand at 149.739 kb on + strand at 149.739 kb on + strand at 149.739 kb on + strand at 149.739 kb on + strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.740 kb on - strand at 149.743 kb on - strand at 149.743 kb on - strand at 149.743 kb on - strand at 149.743 kb on - strand at 149.743 kb on - strand at 149.823 kb on + strand at 149.823 kb on + strand at 149.823 kb on + strand at 149.823 kb on + strand at 149.823 kb on + strand at 149.824 kb on - strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.867 kb on + strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.868 kb on - strand at 149.879 kb on + strand at 149.879 kb on + strand at 149.880 kb on - strand at 149.880 kb on - strand at 149.904 kb on + strand at 149.905 kb on - strand at 149.906 kb on + strand at 149.906 kb on + strand at 149.906 kb on + strand at 149.907 kb on - strand at 149.956 kb on + strand, within Ac3H11_325 at 149.956 kb on + strand, within Ac3H11_325 at 149.956 kb on + strand, within Ac3H11_325 at 149.956 kb on + strand, within Ac3H11_325 at 149.956 kb on + strand, within Ac3H11_325 at 149.957 kb on - strand, within Ac3H11_325 at 149.957 kb on - strand, within Ac3H11_325 at 149.957 kb on - strand, within Ac3H11_325 at 149.960 kb on + strand, within Ac3H11_325 at 149.960 kb on + strand, within Ac3H11_325 at 149.960 kb on + strand, within Ac3H11_325 at 149.960 kb on + strand, within Ac3H11_325 at 149.960 kb on + strand, within Ac3H11_325 at 149.961 kb on - strand, within Ac3H11_325 at 149.961 kb on - strand, within Ac3H11_325 at 149.961 kb on - strand, within Ac3H11_325 at 149.961 kb on - strand, within Ac3H11_325 at 149.972 kb on + strand, within Ac3H11_325 at 149.974 kb on + strand, within Ac3H11_325 at 149.974 kb on + strand, within Ac3H11_325 at 149.975 kb on - strand, within Ac3H11_325 at 149.975 kb on - strand, within Ac3H11_325 at 149.985 kb on + strand, within Ac3H11_325 at 149.985 kb on + strand, within Ac3H11_325 at 149.985 kb on + strand, within Ac3H11_325 at 149.985 kb on + strand, within Ac3H11_325 at 149.986 kb on - strand, within Ac3H11_325 at 149.986 kb on - strand, within Ac3H11_325 at 149.986 kb on - strand, within Ac3H11_325 at 149.986 kb on - strand, within Ac3H11_325 at 149.986 kb on - strand, within Ac3H11_325 at 150.065 kb on + strand at 150.066 kb on - strand at 150.066 kb on - strand at 150.073 kb on - strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.085 kb on + strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.111 kb on - strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.212 kb on + strand at 150.213 kb on - strand at 150.213 kb on - strand at 150.213 kb on - strand at 150.213 kb on - strand at 150.213 kb on - strand at 150.227 kb on + strand at 150.293 kb on - strand at 150.293 kb on - strand at 150.293 kb on - strand at 150.303 kb on - strand at 150.303 kb on - strand at 150.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.01 mg/ml remove 145,822 + Ac3H11_322 0.40 -0.2 145,822 + Ac3H11_322 0.40 +0.6 145,822 + Ac3H11_322 0.40 +0.1 145,940 + Ac3H11_322 0.50 -0.1 145,940 + Ac3H11_322 0.50 +1.8 145,940 + Ac3H11_322 0.50 +1.0 145,940 + Ac3H11_322 0.50 -0.1 145,941 - Ac3H11_322 0.50 -0.4 145,941 - Ac3H11_322 0.50 -0.3 146,384 - Ac3H11_322 0.87 -1.1 146,544 + +0.6 146,544 + +0.6 146,544 + +0.8 146,544 + -2.0 146,544 + -0.5 146,594 + -0.4 146,595 - -1.1 147,035 - -1.5 147,035 - +0.7 147,889 + Ac3H11_324 0.41 -0.4 147,890 - Ac3H11_324 0.41 +0.2 147,944 - Ac3H11_324 0.43 +0.5 147,944 - Ac3H11_324 0.43 +0.2 148,147 + Ac3H11_324 0.50 +0.1 148,147 + Ac3H11_324 0.50 -0.3 148,147 + Ac3H11_324 0.50 +0.2 148,147 + Ac3H11_324 0.50 -1.2 148,147 + Ac3H11_324 0.50 -0.1 148,147 + Ac3H11_324 0.50 -1.9 148,148 - Ac3H11_324 0.50 -0.1 148,148 - Ac3H11_324 0.50 +0.1 148,148 - Ac3H11_324 0.50 -0.8 148,417 + Ac3H11_324 0.61 +0.4 148,417 + Ac3H11_324 0.61 -0.3 148,417 + Ac3H11_324 0.61 +0.4 148,417 + Ac3H11_324 0.61 -0.2 148,417 + Ac3H11_324 0.61 -0.1 148,417 + Ac3H11_324 0.61 +0.4 148,417 + Ac3H11_324 0.61 -0.6 148,418 - Ac3H11_324 0.61 -0.7 148,418 - Ac3H11_324 0.61 +0.2 148,418 - Ac3H11_324 0.61 +0.4 148,418 - Ac3H11_324 0.61 -0.5 148,418 - Ac3H11_324 0.61 -0.4 148,418 - Ac3H11_324 0.61 -0.4 148,623 + Ac3H11_324 0.68 +0.4 148,624 - Ac3H11_324 0.68 -0.3 148,624 - Ac3H11_324 0.68 -0.2 148,624 - Ac3H11_324 0.68 -0.7 148,669 + Ac3H11_324 0.70 +0.8 148,669 + Ac3H11_324 0.70 +0.2 148,670 - Ac3H11_324 0.70 +0.6 148,670 - Ac3H11_324 0.70 -0.4 148,670 - Ac3H11_324 0.70 +0.2 148,670 - Ac3H11_324 0.70 +0.2 148,696 + Ac3H11_324 0.71 +1.1 148,697 - Ac3H11_324 0.71 +0.3 148,697 - Ac3H11_324 0.71 +0.5 148,697 - Ac3H11_324 0.71 +0.6 148,697 - Ac3H11_324 0.71 +1.2 148,697 - Ac3H11_324 0.71 -0.7 148,811 - Ac3H11_324 0.75 -2.1 149,077 + Ac3H11_324 0.85 +0.1 149,077 + Ac3H11_324 0.85 +0.2 149,077 + Ac3H11_324 0.85 +0.0 149,077 + Ac3H11_324 0.85 -1.2 149,078 - Ac3H11_324 0.85 -0.1 149,078 - Ac3H11_324 0.85 +0.2 149,078 - Ac3H11_324 0.85 -0.4 149,078 - Ac3H11_324 0.85 +1.7 149,369 + +0.2 149,369 + +1.0 149,369 + -0.0 149,369 + +1.9 149,369 + -0.0 149,369 + -0.5 149,369 + +0.2 149,369 + +0.2 149,369 + +1.4 149,370 - -1.1 149,370 - +1.1 149,370 - +0.3 149,370 - -0.3 149,370 - -0.2 149,370 - +1.8 149,370 - +0.5 149,370 - -0.5 149,467 + -0.9 149,467 + +0.5 149,468 - -0.6 149,468 - -0.1 149,468 - +0.5 149,496 + -0.6 149,496 + +1.3 149,496 + +0.1 149,496 + +0.4 149,496 + +0.2 149,496 + +0.8 149,497 - -0.1 149,497 - -0.1 149,497 - -0.1 149,497 - -0.4 149,502 + -0.4 149,502 + -0.3 149,502 + -0.6 149,503 - +2.2 149,503 - -0.3 149,570 + +1.1 149,570 + -0.5 149,570 + +0.6 149,570 + -1.2 149,571 - +0.2 149,571 - +0.4 149,571 - +1.1 149,571 - -0.7 149,636 + -0.1 149,636 + +0.4 149,636 + +0.5 149,636 + +1.1 149,636 + +1.0 149,636 + -0.3 149,636 + -0.7 149,637 - -0.5 149,637 - -0.2 149,637 - -0.1 149,637 - -0.8 149,637 - -0.7 149,637 - -0.7 149,637 - -0.7 149,637 - +0.5 149,637 - -0.1 149,640 + +0.9 149,640 + -0.2 149,640 + -0.2 149,640 + -1.3 149,640 + -0.9 149,640 + -2.8 149,640 + +0.6 149,641 - +0.6 149,641 - -0.2 149,641 - +1.1 149,641 - -0.5 149,641 - -0.2 149,641 - +0.5 149,641 - +0.2 149,727 + +0.9 149,727 + -0.1 149,727 + -0.0 149,727 + -0.8 149,727 + -1.0 149,727 + +0.6 149,727 + +0.5 149,727 + +0.0 149,727 + +1.2 149,727 + -0.3 149,727 + +0.8 149,727 + +0.1 149,727 + -0.0 149,728 - +0.1 149,728 - +0.5 149,728 - +0.5 149,728 - -0.2 149,728 - -1.0 149,728 - +0.5 149,728 - +0.2 149,739 + -0.2 149,739 + +0.4 149,739 + +0.7 149,739 + +0.5 149,739 + +1.1 149,740 - -1.1 149,740 - +0.5 149,740 - -0.1 149,740 - -1.4 149,740 - +0.9 149,743 - -0.6 149,743 - +0.6 149,743 - -1.4 149,743 - +0.5 149,743 - +0.2 149,823 + -0.1 149,823 + +0.8 149,823 + +0.2 149,823 + +0.3 149,823 + -0.2 149,824 - -2.5 149,867 + +0.5 149,867 + -1.2 149,867 + -0.5 149,867 + +0.5 149,867 + +0.9 149,867 + +0.1 149,867 + +1.0 149,867 + +0.7 149,867 + +0.6 149,867 + -0.4 149,867 + +0.7 149,867 + -0.6 149,867 + +0.6 149,867 + +0.0 149,867 + +0.8 149,868 - +1.3 149,868 - +1.2 149,868 - +0.5 149,868 - +0.3 149,868 - -0.8 149,868 - -0.0 149,868 - +1.7 149,868 - -1.5 149,868 - +0.0 149,868 - -0.9 149,868 - +0.2 149,868 - -0.1 149,868 - -0.5 149,868 - +0.1 149,868 - +0.3 149,868 - +2.4 149,868 - +0.0 149,879 + +0.5 149,879 + +0.1 149,880 - -0.3 149,880 - -0.8 149,904 + -0.4 149,905 - -0.1 149,906 + -2.0 149,906 + -0.9 149,906 + +0.3 149,907 - +1.5 149,956 + Ac3H11_325 0.21 +0.7 149,956 + Ac3H11_325 0.21 +0.3 149,956 + Ac3H11_325 0.21 +0.2 149,956 + Ac3H11_325 0.21 -0.1 149,956 + Ac3H11_325 0.21 +0.4 149,957 - Ac3H11_325 0.21 +0.1 149,957 - Ac3H11_325 0.21 -1.8 149,957 - Ac3H11_325 0.21 -0.5 149,960 + Ac3H11_325 0.24 +0.4 149,960 + Ac3H11_325 0.24 -1.6 149,960 + Ac3H11_325 0.24 -1.2 149,960 + Ac3H11_325 0.24 +0.0 149,960 + Ac3H11_325 0.24 -0.6 149,961 - Ac3H11_325 0.25 -0.7 149,961 - Ac3H11_325 0.25 +0.8 149,961 - Ac3H11_325 0.25 +0.3 149,961 - Ac3H11_325 0.25 -0.6 149,972 + Ac3H11_325 0.33 +1.3 149,974 + Ac3H11_325 0.35 +0.0 149,974 + Ac3H11_325 0.35 +0.4 149,975 - Ac3H11_325 0.36 -0.2 149,975 - Ac3H11_325 0.36 -0.7 149,985 + Ac3H11_325 0.44 -0.9 149,985 + Ac3H11_325 0.44 -0.7 149,985 + Ac3H11_325 0.44 +0.7 149,985 + Ac3H11_325 0.44 +0.5 149,986 - Ac3H11_325 0.44 -0.0 149,986 - Ac3H11_325 0.44 -0.1 149,986 - Ac3H11_325 0.44 +1.2 149,986 - Ac3H11_325 0.44 +0.2 149,986 - Ac3H11_325 0.44 +0.4 150,065 + -0.1 150,066 - -0.2 150,066 - -0.1 150,073 - -1.1 150,085 + -0.5 150,085 + +0.1 150,085 + +1.0 150,085 + -0.0 150,085 + -0.2 150,085 + -0.2 150,085 + -0.0 150,085 + -0.5 150,085 + -1.2 150,086 - +0.8 150,086 - -0.5 150,086 - -0.6 150,086 - -0.3 150,086 - +0.1 150,086 - -0.1 150,086 - +0.8 150,086 - -0.2 150,111 - +1.2 150,212 + -0.0 150,212 + -0.8 150,212 + -0.1 150,212 + -0.2 150,212 + -0.6 150,212 + +0.5 150,212 + -1.2 150,212 + -0.5 150,213 - -0.3 150,213 - +0.5 150,213 - -0.9 150,213 - -0.4 150,213 - -0.1 150,227 + +0.4 150,293 - -0.0 150,293 - +0.5 150,293 - +0.6 150,303 - +1.4 150,303 - -0.2 150,303 - +0.1
Or see this region's nucleotide sequence