Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_298

Experiment: Ceftazidime 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_297 and Ac3H11_298 are separated by 103 nucleotidesAc3H11_298 and Ac3H11_299 are separated by 102 nucleotides Ac3H11_297 - COG2833: uncharacterized protein, at 117,998 to 118,801 _297 Ac3H11_298 - EAL domain protein, at 118,905 to 120,173 _298 Ac3H11_299 - EAL domain protein, at 120,276 to 121,556 _299 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 117.993 kb on + strandat 117.993 kb on + strandat 117.993 kb on + strandat 117.993 kb on + strandat 117.993 kb on + strandat 117.993 kb on + strandat 117.993 kb on + strandat 117.993 kb on + strandat 117.993 kb on + strandat 117.994 kb on - strandat 117.994 kb on - strandat 117.994 kb on - strandat 117.994 kb on - strandat 117.994 kb on - strandat 117.994 kb on - strandat 118.076 kb on + strandat 118.077 kb on - strandat 118.090 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.316 kb on + strand, within Ac3H11_297at 118.317 kb on - strand, within Ac3H11_297at 118.317 kb on - strand, within Ac3H11_297at 118.317 kb on - strand, within Ac3H11_297at 118.317 kb on - strand, within Ac3H11_297at 118.317 kb on - strand, within Ac3H11_297at 118.317 kb on - strand, within Ac3H11_297at 118.317 kb on - strand, within Ac3H11_297at 118.319 kb on + strand, within Ac3H11_297at 118.319 kb on + strand, within Ac3H11_297at 118.320 kb on - strand, within Ac3H11_297at 118.320 kb on - strand, within Ac3H11_297at 118.320 kb on - strand, within Ac3H11_297at 118.320 kb on - strand, within Ac3H11_297at 118.320 kb on - strand, within Ac3H11_297at 118.320 kb on - strand, within Ac3H11_297at 118.403 kb on + strand, within Ac3H11_297at 118.404 kb on - strand, within Ac3H11_297at 118.404 kb on - strand, within Ac3H11_297at 118.640 kb on + strand, within Ac3H11_297at 118.640 kb on + strand, within Ac3H11_297at 118.641 kb on - strand, within Ac3H11_297at 118.685 kb on + strand, within Ac3H11_297at 118.686 kb on - strand, within Ac3H11_297at 118.686 kb on - strand, within Ac3H11_297at 118.706 kb on + strand, within Ac3H11_297at 118.706 kb on + strand, within Ac3H11_297at 118.706 kb on + strand, within Ac3H11_297at 118.706 kb on + strand, within Ac3H11_297at 118.706 kb on + strand, within Ac3H11_297at 118.706 kb on + strand, within Ac3H11_297at 118.706 kb on + strand, within Ac3H11_297at 118.706 kb on + strand, within Ac3H11_297at 118.706 kb on + strand, within Ac3H11_297at 118.706 kb on + strand, within Ac3H11_297at 118.707 kb on - strand, within Ac3H11_297at 118.707 kb on - strand, within Ac3H11_297at 118.707 kb on - strand, within Ac3H11_297at 118.707 kb on - strand, within Ac3H11_297at 118.707 kb on - strand, within Ac3H11_297at 118.707 kb on - strand, within Ac3H11_297at 118.707 kb on - strand, within Ac3H11_297at 118.707 kb on - strand, within Ac3H11_297at 118.707 kb on - strand, within Ac3H11_297at 118.707 kb on - strand, within Ac3H11_297at 118.765 kb on + strandat 118.811 kb on + strandat 118.835 kb on + strandat 118.835 kb on + strandat 118.835 kb on + strandat 118.836 kb on - strandat 118.895 kb on + strandat 118.895 kb on + strandat 118.895 kb on + strandat 118.895 kb on + strandat 118.895 kb on + strandat 118.896 kb on - strandat 118.896 kb on - strandat 118.896 kb on - strandat 118.896 kb on - strandat 119.015 kb on - strandat 119.015 kb on - strandat 119.022 kb on + strandat 119.022 kb on + strandat 119.023 kb on - strandat 119.023 kb on - strandat 119.334 kb on + strand, within Ac3H11_298at 119.334 kb on + strand, within Ac3H11_298at 119.334 kb on + strand, within Ac3H11_298at 119.335 kb on - strand, within Ac3H11_298at 119.335 kb on - strand, within Ac3H11_298at 119.361 kb on + strand, within Ac3H11_298at 119.361 kb on + strand, within Ac3H11_298at 119.361 kb on + strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.362 kb on - strand, within Ac3H11_298at 119.418 kb on + strand, within Ac3H11_298at 119.419 kb on - strand, within Ac3H11_298at 119.478 kb on + strand, within Ac3H11_298at 119.478 kb on + strand, within Ac3H11_298at 119.478 kb on + strand, within Ac3H11_298at 119.479 kb on - strand, within Ac3H11_298at 119.479 kb on - strand, within Ac3H11_298at 119.479 kb on - strand, within Ac3H11_298at 120.236 kb on + strandat 120.236 kb on + strandat 120.236 kb on + strandat 120.236 kb on + strandat 120.236 kb on + strandat 120.236 kb on + strandat 120.237 kb on - strandat 120.237 kb on - strandat 120.263 kb on + strandat 120.394 kb on - strandat 120.400 kb on - strandat 120.480 kb on + strand, within Ac3H11_299at 120.480 kb on + strand, within Ac3H11_299at 120.481 kb on - strand, within Ac3H11_299at 120.481 kb on - strand, within Ac3H11_299at 120.481 kb on - strand, within Ac3H11_299at 120.714 kb on + strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.859 kb on - strand, within Ac3H11_299at 120.859 kb on - strand, within Ac3H11_299at 120.859 kb on - strand, within Ac3H11_299at 120.901 kb on - strand, within Ac3H11_299

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.01 mg/ml
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117,993 + -0.2
117,993 + -0.1
117,993 + +0.1
117,993 + +0.0
117,993 + -0.1
117,993 + +0.7
117,993 + -0.8
117,993 + +1.6
117,993 + -0.5
117,994 - -0.3
117,994 - -1.2
117,994 - -1.0
117,994 - +0.2
117,994 - -0.3
117,994 - -0.8
118,076 + -0.1
118,077 - +0.7
118,090 + Ac3H11_297 0.11 -0.8
118,316 + Ac3H11_297 0.40 +0.3
118,316 + Ac3H11_297 0.40 -0.2
118,316 + Ac3H11_297 0.40 -0.2
118,316 + Ac3H11_297 0.40 -0.9
118,316 + Ac3H11_297 0.40 -0.5
118,316 + Ac3H11_297 0.40 -0.1
118,316 + Ac3H11_297 0.40 -0.8
118,316 + Ac3H11_297 0.40 +0.2
118,316 + Ac3H11_297 0.40 -0.0
118,316 + Ac3H11_297 0.40 +0.6
118,316 + Ac3H11_297 0.40 +0.3
118,317 - Ac3H11_297 0.40 -0.7
118,317 - Ac3H11_297 0.40 +0.2
118,317 - Ac3H11_297 0.40 +0.3
118,317 - Ac3H11_297 0.40 -0.0
118,317 - Ac3H11_297 0.40 +0.5
118,317 - Ac3H11_297 0.40 -1.0
118,317 - Ac3H11_297 0.40 -0.8
118,319 + Ac3H11_297 0.40 +0.1
118,319 + Ac3H11_297 0.40 +0.0
118,320 - Ac3H11_297 0.40 -0.0
118,320 - Ac3H11_297 0.40 +0.6
118,320 - Ac3H11_297 0.40 -0.7
118,320 - Ac3H11_297 0.40 +0.5
118,320 - Ac3H11_297 0.40 +1.0
118,320 - Ac3H11_297 0.40 -0.2
118,403 + Ac3H11_297 0.50 +0.7
118,404 - Ac3H11_297 0.50 +0.1
118,404 - Ac3H11_297 0.50 -0.1
118,640 + Ac3H11_297 0.80 +2.0
118,640 + Ac3H11_297 0.80 -0.2
118,641 - Ac3H11_297 0.80 +4.3
118,685 + Ac3H11_297 0.85 -0.3
118,686 - Ac3H11_297 0.86 +1.0
118,686 - Ac3H11_297 0.86 +0.5
118,706 + Ac3H11_297 0.88 -0.6
118,706 + Ac3H11_297 0.88 +0.6
118,706 + Ac3H11_297 0.88 +0.0
118,706 + Ac3H11_297 0.88 +0.5
118,706 + Ac3H11_297 0.88 -0.3
118,706 + Ac3H11_297 0.88 +0.2
118,706 + Ac3H11_297 0.88 -0.3
118,706 + Ac3H11_297 0.88 -1.1
118,706 + Ac3H11_297 0.88 -0.1
118,706 + Ac3H11_297 0.88 -0.2
118,707 - Ac3H11_297 0.88 -0.4
118,707 - Ac3H11_297 0.88 +0.3
118,707 - Ac3H11_297 0.88 +0.3
118,707 - Ac3H11_297 0.88 +0.7
118,707 - Ac3H11_297 0.88 +0.8
118,707 - Ac3H11_297 0.88 +0.3
118,707 - Ac3H11_297 0.88 +0.1
118,707 - Ac3H11_297 0.88 -0.4
118,707 - Ac3H11_297 0.88 +0.5
118,707 - Ac3H11_297 0.88 -0.2
118,765 + -0.2
118,811 + +0.6
118,835 + -1.5
118,835 + -1.1
118,835 + -0.2
118,836 - -2.0
118,895 + +1.8
118,895 + +0.7
118,895 + -0.0
118,895 + +1.8
118,895 + +0.0
118,896 - -0.2
118,896 - +0.3
118,896 - -1.1
118,896 - +0.0
119,015 - -0.2
119,015 - -0.8
119,022 + -1.5
119,022 + -0.9
119,023 - -0.5
119,023 - -0.6
119,334 + Ac3H11_298 0.34 -1.5
119,334 + Ac3H11_298 0.34 -1.3
119,334 + Ac3H11_298 0.34 -0.1
119,335 - Ac3H11_298 0.34 +0.1
119,335 - Ac3H11_298 0.34 -0.4
119,361 + Ac3H11_298 0.36 +0.4
119,361 + Ac3H11_298 0.36 -0.4
119,361 + Ac3H11_298 0.36 +1.1
119,362 - Ac3H11_298 0.36 -0.5
119,362 - Ac3H11_298 0.36 -0.4
119,362 - Ac3H11_298 0.36 -0.5
119,362 - Ac3H11_298 0.36 +0.1
119,362 - Ac3H11_298 0.36 -0.6
119,362 - Ac3H11_298 0.36 -0.1
119,362 - Ac3H11_298 0.36 +0.3
119,418 + Ac3H11_298 0.40 +0.3
119,419 - Ac3H11_298 0.41 -2.2
119,478 + Ac3H11_298 0.45 +0.3
119,478 + Ac3H11_298 0.45 -1.0
119,478 + Ac3H11_298 0.45 +0.6
119,479 - Ac3H11_298 0.45 -1.3
119,479 - Ac3H11_298 0.45 +0.4
119,479 - Ac3H11_298 0.45 +0.1
120,236 + -0.6
120,236 + -0.7
120,236 + +0.7
120,236 + +0.2
120,236 + +0.3
120,236 + +0.5
120,237 - +1.2
120,237 - -2.1
120,263 + +1.4
120,394 - -0.1
120,400 - -0.5
120,480 + Ac3H11_299 0.16 +0.1
120,480 + Ac3H11_299 0.16 -2.7
120,481 - Ac3H11_299 0.16 +0.6
120,481 - Ac3H11_299 0.16 -0.8
120,481 - Ac3H11_299 0.16 +0.4
120,714 + Ac3H11_299 0.34 +0.6
120,715 - Ac3H11_299 0.34 +0.2
120,715 - Ac3H11_299 0.34 +1.9
120,715 - Ac3H11_299 0.34 +0.5
120,715 - Ac3H11_299 0.34 +0.4
120,859 - Ac3H11_299 0.46 +0.4
120,859 - Ac3H11_299 0.46 +0.7
120,859 - Ac3H11_299 0.46 +0.1
120,901 - Ac3H11_299 0.49 +0.7

Or see this region's nucleotide sequence