Experiment: Ceftazidime 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2192 and Ac3H11_2193 are separated by 289 nucleotides Ac3H11_2193 and Ac3H11_2194 are separated by 70 nucleotides Ac3H11_2194 and Ac3H11_2195 are separated by 145 nucleotides
Ac3H11_2192 - FIG000557: hypothetical protein co-occurring with RecR, at 422,095 to 422,943
_2192
Ac3H11_2193 - UPF0311 protein RPA1785, at 423,233 to 423,616
_2193
Ac3H11_2194 - putative exported protein, at 423,687 to 424,688
_2194
Ac3H11_2195 - Chlorogenate esterase, at 424,834 to 426,528
_2195
Position (kb) 423
424
425 Strain fitness (log2 ratio) -1
0
1
2
3 at 422.732 kb on + strand, within Ac3H11_2192 at 422.733 kb on - strand, within Ac3H11_2192 at 422.819 kb on + strand, within Ac3H11_2192 at 423.082 kb on - strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.133 kb on - strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.369 kb on - strand, within Ac3H11_2193 at 423.369 kb on - strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.489 kb on - strand, within Ac3H11_2193 at 423.576 kb on - strand, within Ac3H11_2193 at 423.589 kb on - strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.976 kb on - strand, within Ac3H11_2194 at 424.026 kb on + strand, within Ac3H11_2194 at 424.026 kb on + strand, within Ac3H11_2194 at 424.027 kb on - strand, within Ac3H11_2194 at 424.027 kb on - strand, within Ac3H11_2194 at 424.027 kb on - strand, within Ac3H11_2194 at 424.266 kb on + strand, within Ac3H11_2194 at 424.267 kb on - strand, within Ac3H11_2194 at 425.000 kb on + strand at 425.044 kb on + strand, within Ac3H11_2195 at 425.044 kb on + strand, within Ac3H11_2195 at 425.044 kb on + strand, within Ac3H11_2195 at 425.044 kb on + strand, within Ac3H11_2195 at 425.044 kb on + strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.158 kb on + strand, within Ac3H11_2195 at 425.158 kb on + strand, within Ac3H11_2195 at 425.158 kb on + strand, within Ac3H11_2195 at 425.159 kb on - strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.390 kb on - strand, within Ac3H11_2195 at 425.390 kb on - strand, within Ac3H11_2195 at 425.390 kb on - strand, within Ac3H11_2195 at 425.390 kb on - strand, within Ac3H11_2195 at 425.390 kb on - strand, within Ac3H11_2195 at 425.398 kb on + strand, within Ac3H11_2195 at 425.399 kb on - strand, within Ac3H11_2195 at 425.443 kb on + strand, within Ac3H11_2195 at 425.443 kb on + strand, within Ac3H11_2195 at 425.444 kb on - strand, within Ac3H11_2195 at 425.444 kb on - strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.468 kb on - strand, within Ac3H11_2195 at 425.468 kb on - strand, within Ac3H11_2195 at 425.468 kb on - strand, within Ac3H11_2195 at 425.468 kb on - strand, within Ac3H11_2195 at 425.530 kb on + strand, within Ac3H11_2195 at 425.530 kb on + strand, within Ac3H11_2195 at 425.531 kb on - strand, within Ac3H11_2195 at 425.531 kb on - strand, within Ac3H11_2195 at 425.531 kb on - strand, within Ac3H11_2195
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.01 mg/ml remove 422,732 + Ac3H11_2192 0.75 +0.6 422,733 - Ac3H11_2192 0.75 +0.6 422,819 + Ac3H11_2192 0.85 -0.6 423,082 - +1.1 423,127 + -0.2 423,127 + +0.5 423,127 + +0.3 423,127 + +0.7 423,127 + -0.0 423,127 + -0.4 423,127 + +0.4 423,128 - +1.3 423,128 - +0.0 423,128 - +0.3 423,128 - -0.7 423,128 - +0.2 423,132 + +0.2 423,132 + -0.7 423,132 + -0.2 423,132 + +0.7 423,133 - +0.8 423,139 + +1.3 423,139 + +1.3 423,139 + +0.3 423,139 + -0.9 423,139 + -0.2 423,139 + +0.4 423,139 + +1.0 423,140 - -1.1 423,140 - -0.5 423,140 - +0.2 423,140 - +0.0 423,140 - +0.1 423,140 - +0.5 423,140 - +0.5 423,140 - -0.6 423,140 - -0.1 423,368 + Ac3H11_2193 0.35 -0.2 423,368 + Ac3H11_2193 0.35 +0.1 423,368 + Ac3H11_2193 0.35 +0.2 423,368 + Ac3H11_2193 0.35 -1.5 423,369 - Ac3H11_2193 0.35 +0.5 423,369 - Ac3H11_2193 0.35 +0.8 423,401 + Ac3H11_2193 0.44 +0.3 423,401 + Ac3H11_2193 0.44 -0.7 423,401 + Ac3H11_2193 0.44 +0.1 423,401 + Ac3H11_2193 0.44 +1.3 423,401 + Ac3H11_2193 0.44 +0.9 423,401 + Ac3H11_2193 0.44 +0.1 423,402 - Ac3H11_2193 0.44 -0.7 423,402 - Ac3H11_2193 0.44 +0.3 423,402 - Ac3H11_2193 0.44 +0.2 423,402 - Ac3H11_2193 0.44 -0.7 423,402 - Ac3H11_2193 0.44 -0.2 423,402 - Ac3H11_2193 0.44 +0.9 423,402 - Ac3H11_2193 0.44 -0.2 423,402 - Ac3H11_2193 0.44 +0.5 423,488 + Ac3H11_2193 0.66 -0.0 423,488 + Ac3H11_2193 0.66 -0.2 423,488 + Ac3H11_2193 0.66 +0.2 423,488 + Ac3H11_2193 0.66 +3.1 423,488 + Ac3H11_2193 0.66 +0.1 423,489 - Ac3H11_2193 0.67 +0.5 423,576 - Ac3H11_2193 0.89 -0.2 423,589 - +0.2 423,668 + -1.5 423,668 + +0.8 423,668 + -0.1 423,668 + +0.6 423,668 + -0.2 423,668 + +0.2 423,668 + +0.2 423,668 + +1.1 423,668 + -0.0 423,669 - -0.1 423,669 - +0.0 423,669 - +0.5 423,669 - +0.7 423,669 - +1.2 423,976 - Ac3H11_2194 0.29 +0.1 424,026 + Ac3H11_2194 0.34 -0.2 424,026 + Ac3H11_2194 0.34 -0.2 424,027 - Ac3H11_2194 0.34 +0.8 424,027 - Ac3H11_2194 0.34 -0.2 424,027 - Ac3H11_2194 0.34 +0.6 424,266 + Ac3H11_2194 0.58 +0.1 424,267 - Ac3H11_2194 0.58 +0.5 425,000 + -0.2 425,044 + Ac3H11_2195 0.12 +0.2 425,044 + Ac3H11_2195 0.12 -0.7 425,044 + Ac3H11_2195 0.12 -0.1 425,044 + Ac3H11_2195 0.12 +1.7 425,044 + Ac3H11_2195 0.12 +0.0 425,045 - Ac3H11_2195 0.12 -1.2 425,045 - Ac3H11_2195 0.12 +0.6 425,045 - Ac3H11_2195 0.12 +0.1 425,045 - Ac3H11_2195 0.12 -0.3 425,045 - Ac3H11_2195 0.12 +0.3 425,045 - Ac3H11_2195 0.12 +0.1 425,045 - Ac3H11_2195 0.12 -0.0 425,045 - Ac3H11_2195 0.12 +0.4 425,045 - Ac3H11_2195 0.12 -0.5 425,045 - Ac3H11_2195 0.12 +1.6 425,158 + Ac3H11_2195 0.19 -0.2 425,158 + Ac3H11_2195 0.19 +0.4 425,158 + Ac3H11_2195 0.19 -0.2 425,159 - Ac3H11_2195 0.19 -0.0 425,389 + Ac3H11_2195 0.33 -0.4 425,389 + Ac3H11_2195 0.33 +1.2 425,389 + Ac3H11_2195 0.33 +0.2 425,389 + Ac3H11_2195 0.33 -0.1 425,389 + Ac3H11_2195 0.33 +0.9 425,389 + Ac3H11_2195 0.33 -1.2 425,389 + Ac3H11_2195 0.33 +0.6 425,390 - Ac3H11_2195 0.33 +0.6 425,390 - Ac3H11_2195 0.33 -1.6 425,390 - Ac3H11_2195 0.33 +0.8 425,390 - Ac3H11_2195 0.33 -0.1 425,390 - Ac3H11_2195 0.33 -0.2 425,398 + Ac3H11_2195 0.33 +1.3 425,399 - Ac3H11_2195 0.33 +1.4 425,443 + Ac3H11_2195 0.36 +0.1 425,443 + Ac3H11_2195 0.36 +0.3 425,444 - Ac3H11_2195 0.36 +0.7 425,444 - Ac3H11_2195 0.36 -0.6 425,467 + Ac3H11_2195 0.37 +0.3 425,467 + Ac3H11_2195 0.37 -0.1 425,467 + Ac3H11_2195 0.37 +0.4 425,467 + Ac3H11_2195 0.37 -0.8 425,467 + Ac3H11_2195 0.37 +0.6 425,467 + Ac3H11_2195 0.37 +0.2 425,468 - Ac3H11_2195 0.37 +2.9 425,468 - Ac3H11_2195 0.37 +1.5 425,468 - Ac3H11_2195 0.37 -0.2 425,468 - Ac3H11_2195 0.37 -0.3 425,530 + Ac3H11_2195 0.41 +1.0 425,530 + Ac3H11_2195 0.41 -0.1 425,531 - Ac3H11_2195 0.41 +0.1 425,531 - Ac3H11_2195 0.41 -0.4 425,531 - Ac3H11_2195 0.41 -0.1
Or see this region's nucleotide sequence