Experiment: Ceftazidime 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2186 and Ac3H11_2187 are separated by 13 nucleotides Ac3H11_2187 and Ac3H11_2188 are separated by 25 nucleotides Ac3H11_2188 and Ac3H11_2189 are separated by 45 nucleotides
Ac3H11_2186 - Sensor protein basS/pmrB (EC 2.7.3.-), at 417,553 to 418,854
_2186
Ac3H11_2187 - DNA-binding response regulator, at 418,868 to 419,527
_2187
Ac3H11_2188 - Ni,Fe-hydrogenase I cytochrome b subunit, at 419,553 to 420,098
_2188
Ac3H11_2189 - hypothetical protein, at 420,144 to 420,401
_2189
Position (kb) 418
419
420 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.653 kb on - strand, within Ac3H11_2186 at 418.691 kb on - strand, within Ac3H11_2186 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.982 kb on - strand, within Ac3H11_2187 at 418.982 kb on - strand, within Ac3H11_2187 at 419.403 kb on + strand, within Ac3H11_2187 at 419.403 kb on + strand, within Ac3H11_2187 at 419.403 kb on + strand, within Ac3H11_2187 at 419.950 kb on + strand, within Ac3H11_2188 at 419.950 kb on + strand, within Ac3H11_2188 at 419.951 kb on - strand, within Ac3H11_2188 at 419.951 kb on - strand, within Ac3H11_2188 at 420.115 kb on - strand at 420.145 kb on + strand at 420.146 kb on - strand at 420.146 kb on - strand at 420.184 kb on + strand, within Ac3H11_2189 at 420.184 kb on + strand, within Ac3H11_2189 at 420.184 kb on + strand, within Ac3H11_2189 at 420.184 kb on + strand, within Ac3H11_2189 at 420.184 kb on + strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.221 kb on - strand, within Ac3H11_2189 at 420.230 kb on - strand, within Ac3H11_2189 at 420.268 kb on + strand, within Ac3H11_2189 at 420.471 kb on + strand at 420.472 kb on - strand at 420.472 kb on - strand at 420.476 kb on + strand at 420.476 kb on + strand at 420.476 kb on + strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.01 mg/ml remove 418,385 + Ac3H11_2186 0.64 +0.7 418,385 + Ac3H11_2186 0.64 +0.4 418,385 + Ac3H11_2186 0.64 -1.5 418,385 + Ac3H11_2186 0.64 -0.5 418,385 + Ac3H11_2186 0.64 +0.3 418,386 - Ac3H11_2186 0.64 +1.7 418,386 - Ac3H11_2186 0.64 +0.8 418,386 - Ac3H11_2186 0.64 +2.3 418,386 - Ac3H11_2186 0.64 +2.0 418,386 - Ac3H11_2186 0.64 +2.6 418,386 - Ac3H11_2186 0.64 +1.6 418,653 - Ac3H11_2186 0.84 +2.0 418,691 - Ac3H11_2186 0.87 +3.0 418,981 + Ac3H11_2187 0.17 +0.0 418,981 + Ac3H11_2187 0.17 -0.5 418,981 + Ac3H11_2187 0.17 -0.2 418,981 + Ac3H11_2187 0.17 +1.1 418,981 + Ac3H11_2187 0.17 -0.8 418,982 - Ac3H11_2187 0.17 +1.0 418,982 - Ac3H11_2187 0.17 +2.1 419,403 + Ac3H11_2187 0.81 -0.8 419,403 + Ac3H11_2187 0.81 -0.2 419,403 + Ac3H11_2187 0.81 +0.0 419,950 + Ac3H11_2188 0.73 +0.3 419,950 + Ac3H11_2188 0.73 +0.2 419,951 - Ac3H11_2188 0.73 +0.3 419,951 - Ac3H11_2188 0.73 +0.6 420,115 - +1.2 420,145 + -0.1 420,146 - +2.8 420,146 - +1.3 420,184 + Ac3H11_2189 0.16 +0.1 420,184 + Ac3H11_2189 0.16 +0.3 420,184 + Ac3H11_2189 0.16 +0.8 420,184 + Ac3H11_2189 0.16 +0.8 420,184 + Ac3H11_2189 0.16 -0.3 420,185 - Ac3H11_2189 0.16 +1.8 420,185 - Ac3H11_2189 0.16 +2.0 420,185 - Ac3H11_2189 0.16 +2.5 420,185 - Ac3H11_2189 0.16 +1.4 420,185 - Ac3H11_2189 0.16 +3.7 420,185 - Ac3H11_2189 0.16 +2.8 420,185 - Ac3H11_2189 0.16 +2.6 420,185 - Ac3H11_2189 0.16 +3.0 420,185 - Ac3H11_2189 0.16 +3.1 420,221 - Ac3H11_2189 0.30 +1.4 420,230 - Ac3H11_2189 0.33 +2.4 420,268 + Ac3H11_2189 0.48 -0.5 420,471 + +0.6 420,472 - +3.4 420,472 - +3.2 420,476 + -0.1 420,476 + -0.0 420,476 + -0.1 420,477 - +3.3 420,477 - +3.2 420,477 - +3.4 420,477 - +3.4 420,477 - +3.8 420,477 - +3.4 420,477 - +3.4 420,477 - +3.5 420,477 - +3.5 420,477 - +3.6 420,477 - +3.4 420,477 - +3.4 420,477 - +3.3 420,477 - +3.6 420,477 - +3.5
Or see this region's nucleotide sequence