Experiment: Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24185 and AO353_24190 are separated by 190 nucleotides AO353_24190 and AO353_24195 are separated by 120 nucleotides AO353_24195 and AO353_24200 are separated by 125 nucleotides
AO353_24185: AO353_24185 - serine/threonine protein phosphatase, at 5,320,052 to 5,320,783
_24185
AO353_24190: AO353_24190 - hypothetical protein, at 5,320,974 to 5,321,231
_24190
AO353_24195: AO353_24195 - hypothetical protein, at 5,321,352 to 5,321,780
_24195
AO353_24200: AO353_24200 - serine--tRNA ligase, at 5,321,906 to 5,323,186
_24200
Position (kb) 5320
5321
5322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5320.008 kb on + strand at 5320.008 kb on + strand at 5320.008 kb on + strand at 5320.009 kb on - strand at 5320.025 kb on + strand at 5320.026 kb on - strand at 5320.031 kb on + strand at 5320.032 kb on - strand at 5320.047 kb on + strand at 5320.047 kb on + strand at 5320.048 kb on - strand at 5320.061 kb on + strand at 5320.061 kb on + strand at 5320.061 kb on + strand at 5320.061 kb on + strand at 5320.061 kb on + strand at 5320.061 kb on + strand at 5320.061 kb on + strand at 5320.118 kb on + strand at 5320.119 kb on - strand at 5320.119 kb on - strand at 5320.119 kb on - strand at 5320.119 kb on - strand at 5320.125 kb on + strand at 5320.125 kb on + strand at 5320.125 kb on + strand at 5320.126 kb on - strand, within AO353_24185 at 5320.126 kb on - strand, within AO353_24185 at 5320.126 kb on - strand, within AO353_24185 at 5320.144 kb on + strand, within AO353_24185 at 5320.145 kb on - strand, within AO353_24185 at 5320.185 kb on + strand, within AO353_24185 at 5320.186 kb on - strand, within AO353_24185 at 5320.186 kb on - strand, within AO353_24185 at 5320.186 kb on - strand, within AO353_24185 at 5320.205 kb on + strand, within AO353_24185 at 5320.205 kb on + strand, within AO353_24185 at 5320.205 kb on + strand, within AO353_24185 at 5320.206 kb on - strand, within AO353_24185 at 5320.229 kb on + strand, within AO353_24185 at 5320.230 kb on - strand, within AO353_24185 at 5320.230 kb on - strand, within AO353_24185 at 5320.296 kb on + strand, within AO353_24185 at 5320.360 kb on + strand, within AO353_24185 at 5320.360 kb on + strand, within AO353_24185 at 5320.360 kb on + strand, within AO353_24185 at 5320.360 kb on + strand, within AO353_24185 at 5320.446 kb on - strand, within AO353_24185 at 5320.669 kb on + strand, within AO353_24185 at 5320.669 kb on + strand, within AO353_24185 at 5320.670 kb on - strand, within AO353_24185 at 5320.781 kb on + strand at 5320.781 kb on + strand at 5320.781 kb on + strand at 5320.781 kb on + strand at 5320.782 kb on - strand at 5320.785 kb on + strand at 5320.785 kb on + strand at 5320.785 kb on + strand at 5320.785 kb on + strand at 5320.785 kb on + strand at 5320.785 kb on + strand at 5320.785 kb on + strand at 5320.785 kb on + strand at 5320.786 kb on - strand at 5320.786 kb on - strand at 5320.786 kb on - strand at 5320.786 kb on - strand at 5320.786 kb on - strand at 5320.786 kb on - strand at 5320.786 kb on - strand at 5320.786 kb on - strand at 5320.840 kb on + strand at 5320.840 kb on + strand at 5320.840 kb on + strand at 5320.866 kb on + strand at 5320.878 kb on + strand at 5320.878 kb on + strand at 5320.878 kb on + strand at 5320.878 kb on + strand at 5320.878 kb on + strand at 5320.878 kb on + strand at 5320.879 kb on - strand at 5320.883 kb on - strand at 5320.883 kb on - strand at 5320.932 kb on + strand at 5320.932 kb on + strand at 5320.933 kb on - strand at 5321.055 kb on + strand, within AO353_24190 at 5321.055 kb on + strand, within AO353_24190 at 5321.093 kb on + strand, within AO353_24190 at 5321.094 kb on - strand, within AO353_24190 at 5321.143 kb on + strand, within AO353_24190 at 5321.180 kb on + strand, within AO353_24190 at 5321.181 kb on - strand, within AO353_24190 at 5321.204 kb on + strand, within AO353_24190 at 5321.204 kb on + strand, within AO353_24190 at 5321.205 kb on - strand, within AO353_24190 at 5321.205 kb on - strand, within AO353_24190 at 5321.208 kb on + strand at 5321.208 kb on + strand at 5321.209 kb on - strand at 5321.209 kb on - strand at 5321.209 kb on - strand at 5321.223 kb on + strand at 5321.258 kb on - strand at 5321.307 kb on + strand at 5321.307 kb on + strand at 5321.307 kb on + strand at 5321.307 kb on + strand at 5321.307 kb on + strand at 5321.307 kb on + strand at 5321.307 kb on + strand at 5321.308 kb on - strand at 5321.308 kb on - strand at 5321.386 kb on + strand at 5321.386 kb on + strand at 5321.386 kb on + strand at 5321.386 kb on + strand at 5321.386 kb on + strand at 5321.386 kb on + strand at 5321.387 kb on - strand at 5321.387 kb on - strand at 5321.387 kb on - strand at 5321.392 kb on - strand at 5321.459 kb on + strand, within AO353_24195 at 5321.460 kb on - strand, within AO353_24195 at 5321.528 kb on + strand, within AO353_24195 at 5321.528 kb on + strand, within AO353_24195 at 5321.529 kb on - strand, within AO353_24195 at 5321.574 kb on + strand, within AO353_24195 at 5321.574 kb on + strand, within AO353_24195 at 5321.574 kb on + strand, within AO353_24195 at 5321.574 kb on + strand, within AO353_24195 at 5321.575 kb on - strand, within AO353_24195 at 5321.575 kb on - strand, within AO353_24195 at 5321.663 kb on + strand, within AO353_24195 at 5321.688 kb on + strand, within AO353_24195 at 5321.688 kb on + strand, within AO353_24195 at 5321.688 kb on + strand, within AO353_24195 at 5321.688 kb on + strand, within AO353_24195 at 5321.688 kb on + strand, within AO353_24195 at 5321.689 kb on - strand, within AO353_24195 at 5321.689 kb on - strand, within AO353_24195 at 5321.718 kb on + strand, within AO353_24195 at 5321.718 kb on + strand, within AO353_24195 at 5321.718 kb on + strand, within AO353_24195 at 5321.718 kb on + strand, within AO353_24195 at 5321.719 kb on - strand, within AO353_24195 at 5321.719 kb on - strand, within AO353_24195 at 5321.719 kb on - strand, within AO353_24195 at 5321.719 kb on - strand, within AO353_24195 at 5321.719 kb on - strand, within AO353_24195 at 5321.719 kb on - strand, within AO353_24195 at 5321.719 kb on - strand at 5321.778 kb on + strand at 5321.778 kb on + strand at 5321.779 kb on - strand at 5321.779 kb on - strand at 5321.832 kb on + strand at 5321.832 kb on + strand at 5321.833 kb on - strand at 5321.881 kb on + strand at 5321.881 kb on + strand at 5321.882 kb on - strand at 5321.887 kb on - strand at 5321.887 kb on - strand at 5321.887 kb on - strand at 5321.977 kb on - strand at 5321.977 kb on - strand at 5322.058 kb on + strand, within AO353_24200
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1.25 mM remove 5,320,008 + -1.4 5,320,008 + -0.8 5,320,008 + +0.7 5,320,009 - +1.4 5,320,025 + +0.4 5,320,026 - +2.4 5,320,031 + +0.7 5,320,032 - +0.6 5,320,047 + +0.6 5,320,047 + -0.6 5,320,048 - +0.9 5,320,061 + +0.2 5,320,061 + +0.4 5,320,061 + -0.9 5,320,061 + +1.0 5,320,061 + -0.2 5,320,061 + -2.6 5,320,061 + +0.7 5,320,118 + -0.2 5,320,119 - +1.7 5,320,119 - -0.9 5,320,119 - +1.0 5,320,119 - -1.6 5,320,125 + +0.2 5,320,125 + +1.1 5,320,125 + +0.8 5,320,126 - AO353_24185 0.10 +0.6 5,320,126 - AO353_24185 0.10 -0.6 5,320,126 - AO353_24185 0.10 +0.9 5,320,144 + AO353_24185 0.13 -0.6 5,320,145 - AO353_24185 0.13 +1.8 5,320,185 + AO353_24185 0.18 +0.2 5,320,186 - AO353_24185 0.18 +1.8 5,320,186 - AO353_24185 0.18 -0.2 5,320,186 - AO353_24185 0.18 -0.6 5,320,205 + AO353_24185 0.21 -2.9 5,320,205 + AO353_24185 0.21 +1.0 5,320,205 + AO353_24185 0.21 +0.6 5,320,206 - AO353_24185 0.21 -0.0 5,320,229 + AO353_24185 0.24 +0.0 5,320,230 - AO353_24185 0.24 -0.4 5,320,230 - AO353_24185 0.24 -1.2 5,320,296 + AO353_24185 0.33 -0.9 5,320,360 + AO353_24185 0.42 -0.1 5,320,360 + AO353_24185 0.42 +1.4 5,320,360 + AO353_24185 0.42 +1.1 5,320,360 + AO353_24185 0.42 +2.0 5,320,446 - AO353_24185 0.54 +0.7 5,320,669 + AO353_24185 0.84 +1.0 5,320,669 + AO353_24185 0.84 +2.0 5,320,670 - AO353_24185 0.84 -0.2 5,320,781 + -0.2 5,320,781 + +0.6 5,320,781 + +0.7 5,320,781 + -1.3 5,320,782 - +1.7 5,320,785 + -0.6 5,320,785 + -0.0 5,320,785 + +0.4 5,320,785 + -0.3 5,320,785 + -1.2 5,320,785 + -1.9 5,320,785 + -0.8 5,320,785 + +0.0 5,320,786 - +1.4 5,320,786 - -0.2 5,320,786 - -1.9 5,320,786 - +0.4 5,320,786 - -0.2 5,320,786 - +0.7 5,320,786 - +1.6 5,320,786 - +0.7 5,320,840 + +1.4 5,320,840 + +1.0 5,320,840 + -1.2 5,320,866 + -1.8 5,320,878 + -0.0 5,320,878 + -0.3 5,320,878 + -0.0 5,320,878 + +0.8 5,320,878 + -0.6 5,320,878 + +0.1 5,320,879 - +3.2 5,320,883 - -0.9 5,320,883 - -0.6 5,320,932 + -0.4 5,320,932 + +2.0 5,320,933 - -1.3 5,321,055 + AO353_24190 0.31 -0.4 5,321,055 + AO353_24190 0.31 -0.6 5,321,093 + AO353_24190 0.46 +0.1 5,321,094 - AO353_24190 0.47 -1.6 5,321,143 + AO353_24190 0.66 -0.1 5,321,180 + AO353_24190 0.80 -1.5 5,321,181 - AO353_24190 0.80 +1.7 5,321,204 + AO353_24190 0.89 -0.8 5,321,204 + AO353_24190 0.89 -0.6 5,321,205 - AO353_24190 0.90 -2.4 5,321,205 - AO353_24190 0.90 -1.3 5,321,208 + -0.8 5,321,208 + +1.1 5,321,209 - +1.0 5,321,209 - +0.7 5,321,209 - -1.0 5,321,223 + -0.6 5,321,258 - +0.5 5,321,307 + +0.4 5,321,307 + -0.0 5,321,307 + +0.6 5,321,307 + -1.9 5,321,307 + -0.2 5,321,307 + -0.2 5,321,307 + +0.4 5,321,308 - -0.1 5,321,308 - -0.6 5,321,386 + +1.0 5,321,386 + +0.4 5,321,386 + +0.4 5,321,386 + -0.2 5,321,386 + -0.9 5,321,386 + +1.1 5,321,387 - -0.2 5,321,387 - -0.2 5,321,387 - -1.4 5,321,392 - +0.9 5,321,459 + AO353_24195 0.25 +0.4 5,321,460 - AO353_24195 0.25 -0.6 5,321,528 + AO353_24195 0.41 -0.4 5,321,528 + AO353_24195 0.41 +0.1 5,321,529 - AO353_24195 0.41 -0.3 5,321,574 + AO353_24195 0.52 +0.4 5,321,574 + AO353_24195 0.52 +0.1 5,321,574 + AO353_24195 0.52 -0.6 5,321,574 + AO353_24195 0.52 +0.4 5,321,575 - AO353_24195 0.52 -0.6 5,321,575 - AO353_24195 0.52 -1.1 5,321,663 + AO353_24195 0.72 -1.2 5,321,688 + AO353_24195 0.78 -1.1 5,321,688 + AO353_24195 0.78 +0.7 5,321,688 + AO353_24195 0.78 +0.2 5,321,688 + AO353_24195 0.78 -0.2 5,321,688 + AO353_24195 0.78 +0.7 5,321,689 - AO353_24195 0.79 +0.1 5,321,689 - AO353_24195 0.79 -0.8 5,321,718 + AO353_24195 0.85 +0.4 5,321,718 + AO353_24195 0.85 +1.3 5,321,718 + AO353_24195 0.85 +0.9 5,321,718 + AO353_24195 0.85 +0.4 5,321,719 - AO353_24195 0.86 -0.0 5,321,719 - AO353_24195 0.86 +0.0 5,321,719 - AO353_24195 0.86 -0.4 5,321,719 - AO353_24195 0.86 +2.4 5,321,719 - AO353_24195 0.86 +0.4 5,321,719 - AO353_24195 0.86 +0.4 5,321,719 - -1.6 5,321,778 + -0.2 5,321,778 + -0.6 5,321,779 - -1.2 5,321,779 - +1.0 5,321,832 + -0.2 5,321,832 + -0.0 5,321,833 - +0.7 5,321,881 + +0.7 5,321,881 + -0.3 5,321,882 - -0.9 5,321,887 - +1.0 5,321,887 - -1.9 5,321,887 - -0.9 5,321,977 - +0.0 5,321,977 - +0.7 5,322,058 + AO353_24200 0.12 -0.8
Or see this region's nucleotide sequence