Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12565

Experiment: Vanillin 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12555 and AO353_12560 are separated by 3 nucleotidesAO353_12560 and AO353_12565 are separated by 3 nucleotidesAO353_12565 and AO353_12570 overlap by 8 nucleotidesAO353_12570 and AO353_12575 overlap by 8 nucleotidesAO353_12575 and AO353_12580 overlap by 4 nucleotides AO353_12555: AO353_12555 - type II secretion system protein GspF, at 2,768,152 to 2,769,363 _12555 AO353_12560: AO353_12560 - type II secretion system protein GspG, at 2,769,367 to 2,769,822 _12560 AO353_12565: AO353_12565 - type II secretion system protein GspH, at 2,769,826 to 2,770,293 _12565 AO353_12570: AO353_12570 - type II secretion system protein GspI, at 2,770,286 to 2,770,678 _12570 AO353_12575: AO353_12575 - type II secretion system protein GspJ, at 2,770,671 to 2,771,216 _12575 AO353_12580: AO353_12580 - type II secretory protein PulK, at 2,771,213 to 2,772,067 _12580 Position (kb) 2769 2770 2771Strain fitness (log2 ratio) -2 -1 0 1 2at 2768.852 kb on + strand, within AO353_12555at 2768.852 kb on + strand, within AO353_12555at 2768.852 kb on + strand, within AO353_12555at 2768.852 kb on + strand, within AO353_12555at 2768.853 kb on - strand, within AO353_12555at 2768.888 kb on + strand, within AO353_12555at 2768.888 kb on + strand, within AO353_12555at 2768.889 kb on - strand, within AO353_12555at 2768.889 kb on - strand, within AO353_12555at 2768.889 kb on - strand, within AO353_12555at 2769.089 kb on + strand, within AO353_12555at 2769.089 kb on + strand, within AO353_12555at 2769.090 kb on - strand, within AO353_12555at 2769.136 kb on - strand, within AO353_12555at 2769.137 kb on + strand, within AO353_12555at 2769.137 kb on + strand, within AO353_12555at 2769.137 kb on + strand, within AO353_12555at 2769.137 kb on + strand, within AO353_12555at 2769.138 kb on - strand, within AO353_12555at 2769.264 kb on - strandat 2769.381 kb on + strandat 2769.381 kb on + strandat 2769.381 kb on + strandat 2769.384 kb on + strandat 2769.384 kb on + strandat 2769.384 kb on + strandat 2769.384 kb on + strandat 2769.385 kb on - strandat 2769.385 kb on - strandat 2769.385 kb on - strandat 2769.385 kb on - strandat 2769.385 kb on - strandat 2769.411 kb on + strandat 2769.431 kb on + strand, within AO353_12560at 2769.432 kb on - strand, within AO353_12560at 2769.556 kb on + strand, within AO353_12560at 2769.556 kb on + strand, within AO353_12560at 2769.556 kb on + strand, within AO353_12560at 2769.556 kb on + strand, within AO353_12560at 2769.556 kb on + strand, within AO353_12560at 2769.557 kb on - strand, within AO353_12560at 2769.557 kb on - strand, within AO353_12560at 2769.662 kb on - strand, within AO353_12560at 2769.700 kb on + strand, within AO353_12560at 2769.706 kb on + strand, within AO353_12560at 2769.706 kb on + strand, within AO353_12560at 2769.707 kb on - strand, within AO353_12560at 2769.707 kb on - strand, within AO353_12560at 2769.751 kb on + strand, within AO353_12560at 2769.752 kb on - strand, within AO353_12560at 2769.752 kb on - strand, within AO353_12560at 2769.752 kb on - strand, within AO353_12560at 2769.752 kb on - strand, within AO353_12560at 2769.752 kb on - strand, within AO353_12560at 2769.854 kb on + strandat 2769.854 kb on + strandat 2769.855 kb on - strandat 2769.855 kb on - strandat 2769.855 kb on - strandat 2769.855 kb on - strandat 2769.983 kb on + strand, within AO353_12565at 2769.983 kb on + strand, within AO353_12565at 2769.984 kb on - strand, within AO353_12565at 2769.984 kb on - strand, within AO353_12565at 2770.060 kb on + strand, within AO353_12565at 2770.061 kb on - strand, within AO353_12565at 2770.142 kb on + strand, within AO353_12565at 2770.143 kb on - strand, within AO353_12565at 2770.291 kb on + strandat 2770.291 kb on + strandat 2770.333 kb on + strand, within AO353_12570at 2770.333 kb on + strand, within AO353_12570at 2770.406 kb on + strand, within AO353_12570at 2770.406 kb on + strand, within AO353_12570at 2770.407 kb on - strand, within AO353_12570at 2770.407 kb on - strand, within AO353_12570at 2770.517 kb on + strand, within AO353_12570at 2770.518 kb on - strand, within AO353_12570at 2770.518 kb on - strand, within AO353_12570at 2770.638 kb on + strand, within AO353_12570at 2770.639 kb on - strandat 2770.639 kb on - strandat 2770.639 kb on - strandat 2770.639 kb on - strandat 2770.639 kb on - strandat 2770.639 kb on - strandat 2770.676 kb on + strandat 2770.676 kb on + strandat 2770.676 kb on + strandat 2770.677 kb on - strandat 2770.677 kb on - strandat 2770.677 kb on - strandat 2770.965 kb on + strand, within AO353_12575at 2770.965 kb on + strand, within AO353_12575at 2770.965 kb on + strand, within AO353_12575at 2770.965 kb on + strand, within AO353_12575at 2770.965 kb on + strand, within AO353_12575at 2770.965 kb on + strand, within AO353_12575at 2770.966 kb on - strand, within AO353_12575at 2770.966 kb on - strand, within AO353_12575at 2770.987 kb on + strand, within AO353_12575at 2771.074 kb on - strand, within AO353_12575at 2771.074 kb on - strand, within AO353_12575at 2771.074 kb on - strand, within AO353_12575at 2771.114 kb on + strand, within AO353_12575at 2771.115 kb on - strand, within AO353_12575

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1.25 mM
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2,768,852 + AO353_12555 0.58 +0.5
2,768,852 + AO353_12555 0.58 -0.0
2,768,852 + AO353_12555 0.58 -0.3
2,768,852 + AO353_12555 0.58 -0.4
2,768,853 - AO353_12555 0.58 -0.3
2,768,888 + AO353_12555 0.61 +0.9
2,768,888 + AO353_12555 0.61 -1.1
2,768,889 - AO353_12555 0.61 -0.6
2,768,889 - AO353_12555 0.61 +0.6
2,768,889 - AO353_12555 0.61 +0.8
2,769,089 + AO353_12555 0.77 -0.4
2,769,089 + AO353_12555 0.77 +0.2
2,769,090 - AO353_12555 0.77 +1.7
2,769,136 - AO353_12555 0.81 +0.4
2,769,137 + AO353_12555 0.81 +0.2
2,769,137 + AO353_12555 0.81 -0.6
2,769,137 + AO353_12555 0.81 -0.7
2,769,137 + AO353_12555 0.81 +1.0
2,769,138 - AO353_12555 0.81 +0.8
2,769,264 - +1.7
2,769,381 + -1.6
2,769,381 + +0.7
2,769,381 + +0.6
2,769,384 + +1.4
2,769,384 + +0.3
2,769,384 + +0.1
2,769,384 + +0.5
2,769,385 - +0.6
2,769,385 - +0.5
2,769,385 - +2.0
2,769,385 - +0.5
2,769,385 - -0.3
2,769,411 + +0.2
2,769,431 + AO353_12560 0.14 +1.4
2,769,432 - AO353_12560 0.14 +0.3
2,769,556 + AO353_12560 0.41 +0.4
2,769,556 + AO353_12560 0.41 -2.3
2,769,556 + AO353_12560 0.41 -0.4
2,769,556 + AO353_12560 0.41 -0.1
2,769,556 + AO353_12560 0.41 +1.0
2,769,557 - AO353_12560 0.42 -0.0
2,769,557 - AO353_12560 0.42 +0.7
2,769,662 - AO353_12560 0.65 +0.6
2,769,700 + AO353_12560 0.73 -1.1
2,769,706 + AO353_12560 0.74 +1.9
2,769,706 + AO353_12560 0.74 -2.0
2,769,707 - AO353_12560 0.75 -0.8
2,769,707 - AO353_12560 0.75 -0.4
2,769,751 + AO353_12560 0.84 +0.6
2,769,752 - AO353_12560 0.84 -0.8
2,769,752 - AO353_12560 0.84 -0.0
2,769,752 - AO353_12560 0.84 +2.3
2,769,752 - AO353_12560 0.84 +0.9
2,769,752 - AO353_12560 0.84 +0.3
2,769,854 + +0.9
2,769,854 + +1.7
2,769,855 - -0.1
2,769,855 - -0.7
2,769,855 - -1.2
2,769,855 - -1.3
2,769,983 + AO353_12565 0.34 +0.6
2,769,983 + AO353_12565 0.34 -0.7
2,769,984 - AO353_12565 0.34 -0.8
2,769,984 - AO353_12565 0.34 +1.6
2,770,060 + AO353_12565 0.50 -1.0
2,770,061 - AO353_12565 0.50 -0.8
2,770,142 + AO353_12565 0.68 -0.4
2,770,143 - AO353_12565 0.68 -1.1
2,770,291 + +0.2
2,770,291 + +1.1
2,770,333 + AO353_12570 0.12 +0.8
2,770,333 + AO353_12570 0.12 +0.8
2,770,406 + AO353_12570 0.31 +0.8
2,770,406 + AO353_12570 0.31 +0.8
2,770,407 - AO353_12570 0.31 +0.9
2,770,407 - AO353_12570 0.31 +1.1
2,770,517 + AO353_12570 0.59 -0.7
2,770,518 - AO353_12570 0.59 +1.8
2,770,518 - AO353_12570 0.59 -0.8
2,770,638 + AO353_12570 0.90 +0.4
2,770,639 - -2.1
2,770,639 - -0.1
2,770,639 - -1.6
2,770,639 - +0.9
2,770,639 - +1.6
2,770,639 - +0.2
2,770,676 + +1.6
2,770,676 + -1.1
2,770,676 + +0.3
2,770,677 - +0.1
2,770,677 - +1.6
2,770,677 - -1.4
2,770,965 + AO353_12575 0.54 -0.2
2,770,965 + AO353_12575 0.54 +1.2
2,770,965 + AO353_12575 0.54 -0.4
2,770,965 + AO353_12575 0.54 -0.4
2,770,965 + AO353_12575 0.54 +0.4
2,770,965 + AO353_12575 0.54 +0.4
2,770,966 - AO353_12575 0.54 -0.6
2,770,966 - AO353_12575 0.54 +0.2
2,770,987 + AO353_12575 0.58 +0.2
2,771,074 - AO353_12575 0.74 +1.8
2,771,074 - AO353_12575 0.74 -0.8
2,771,074 - AO353_12575 0.74 -0.8
2,771,114 + AO353_12575 0.81 -1.4
2,771,115 - AO353_12575 0.81 -0.2

Or see this region's nucleotide sequence