Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004960

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,185,046	+		ABIE53_004958	0.74	-0.0
1,185,047	-		ABIE53_004958	0.75	-2.8
1,185,047	-		ABIE53_004958	0.75	+0.8
1,185,047	-		ABIE53_004958	0.75	+0.7
1,185,047	-		ABIE53_004958	0.75	+0.2
1,185,047	-		ABIE53_004958	0.75	+0.3
1,185,076	+		ABIE53_004958	0.78	-1.8
1,185,076	+		ABIE53_004958	0.78	+0.9
1,185,076	+		ABIE53_004958	0.78	+0.0
1,185,076	+		ABIE53_004958	0.78	-1.0
1,185,076	+		ABIE53_004958	0.78	-1.0
1,185,076	+		ABIE53_004958	0.78	-0.3
1,185,077	-		ABIE53_004958	0.78	-1.7
1,185,077	-		ABIE53_004958	0.78	+0.2
1,185,077	-		ABIE53_004958	0.78	-2.0
1,185,077	-		ABIE53_004958	0.78	+0.3
1,185,077	-		ABIE53_004958	0.78	-0.4
1,185,077	-		ABIE53_004958	0.78	+1.0
1,185,077	-		ABIE53_004958	0.78	-0.6
1,185,077	-		ABIE53_004958	0.78	+0.4
1,185,077	-		ABIE53_004958	0.78	-1.8
1,185,077	-		ABIE53_004958	0.78	-0.2
1,185,086	-		ABIE53_004958	0.79	-1.3
1,185,094	+		ABIE53_004958	0.80	-0.3
1,185,094	+		ABIE53_004958	0.80	+1.6
1,185,094	+		ABIE53_004958	0.80	+1.1
1,185,094	+		ABIE53_004958	0.80	+1.0
1,185,094	+		ABIE53_004958	0.80	-1.4
1,185,094	+		ABIE53_004958	0.80	-0.4
1,185,094	+		ABIE53_004958	0.80	+0.3
1,185,095	-		ABIE53_004958	0.81	+1.4
1,185,095	-		ABIE53_004958	0.81	+0.9
1,185,095	-		ABIE53_004958	0.81	-2.0
1,185,097	+		ABIE53_004958	0.81	+0.7
1,185,098	-		ABIE53_004958	0.81	+0.0
1,185,098	-		ABIE53_004958	0.81	-2.2
1,185,228	+				+1.7
1,185,228	+				-0.6
1,185,228	+				-0.1
1,185,228	+				-0.4
1,185,229	-				-1.5
1,185,229	-				-2.0
1,185,229	-				-1.6
1,185,229	-				+0.7
1,185,229	-				-1.6
1,185,275	-				+0.3
1,185,275	-				+1.6
1,185,388	+				-0.1
1,185,388	+				-1.0
1,185,388	+				-1.0
1,185,388	+				-1.4
1,185,388	+				+1.2
1,185,389	-				-1.0
1,185,389	-				-0.6
1,185,411	+				+0.8
1,185,411	+				-0.6
1,185,412	-				-1.0
1,185,412	-				-2.3
1,185,421	+				-0.2
1,185,421	+				+0.6
1,185,422	-				+0.4
1,185,422	-				+0.2
1,185,455	+				-3.0
1,185,464	+				+0.3
1,185,464	+				-0.9
1,185,464	+				+1.0
1,185,464	+				-1.2
1,185,464	+				-0.8
1,185,464	+				-2.0
1,185,465	-				+0.3
1,185,465	-				-2.1
1,185,465	-				+1.3
1,185,465	-				-1.3
1,185,465	-				-0.5
1,185,621	+		ABIE53_004959	0.30	-1.0
1,185,621	+		ABIE53_004959	0.30	-1.6
1,185,621	+		ABIE53_004959	0.30	-2.0
1,185,621	+		ABIE53_004959	0.30	-1.6
1,185,657	+		ABIE53_004959	0.40	+0.6
1,185,657	+		ABIE53_004959	0.40	+1.4
1,185,657	+		ABIE53_004959	0.40	-1.3
1,185,657	+		ABIE53_004959	0.40	+0.6
1,185,657	+		ABIE53_004959	0.40	+1.1
1,185,657	+		ABIE53_004959	0.40	-2.0
1,185,658	-		ABIE53_004959	0.40	+0.7
1,185,658	-		ABIE53_004959	0.40	+1.0
1,185,658	-		ABIE53_004959	0.40	-2.2
1,185,658	-		ABIE53_004959	0.40	-1.6
1,185,658	-		ABIE53_004959	0.40	+0.0
1,185,658	-		ABIE53_004959	0.40	-2.2
1,185,754	+		ABIE53_004959	0.66	+0.8
1,185,754	+		ABIE53_004959	0.66	-2.0
1,185,755	-		ABIE53_004959	0.67	+1.9
1,185,755	-		ABIE53_004959	0.67	-2.2
1,185,811	+		ABIE53_004959	0.82	+0.6
1,185,812	-		ABIE53_004959	0.82	-0.7
1,185,870	+				-1.6
1,185,870	+				+1.0
1,185,870	+				+0.0
1,185,870	+				+0.0
1,185,870	+				-0.9
1,185,871	-				+1.0
1,185,871	-				-0.9
1,185,871	-				+0.0
1,185,871	-				+0.7
1,185,871	-				-0.3
1,185,871	-				-0.1
1,185,871	-				-1.3
1,185,871	-				+1.7
1,185,871	-				+0.0
1,185,999	+				-1.6
1,186,000	-				+0.4
1,186,160	-				-2.8
1,186,160	-				-1.0
1,186,474	+		ABIE53_004960	0.24	-1.6
1,186,475	-		ABIE53_004960	0.24	-0.8
1,186,475	-		ABIE53_004960	0.24	+0.0
1,186,475	-		ABIE53_004960	0.24	-2.3
1,186,552	-		ABIE53_004960	0.28	-1.3
1,186,579	-		ABIE53_004960	0.29	+1.0
1,186,660	-		ABIE53_004960	0.33	-2.0
1,187,157	+		ABIE53_004960	0.58	-1.3
1,187,523	-		ABIE53_004960	0.76	-1.6
1,187,550	+		ABIE53_004960	0.78	-1.8
1,187,550	+		ABIE53_004960	0.78	-1.8
1,187,550	+		ABIE53_004960	0.78	-1.1
1,187,551	-		ABIE53_004960	0.78	-4.0
1,187,697	+		ABIE53_004960	0.85	-2.0
1,187,697	+		ABIE53_004960	0.85	+2.7
1,187,697	+		ABIE53_004960	0.85	-1.6
1,187,698	-		ABIE53_004960	0.85	+0.3
1,187,802	+				+2.6
1,187,947	-				-1.8
1,187,995	-				+0.0
1,187,995	-				-2.0
1,187,995	-				-2.3
1,187,995	-				+0.2
1,187,995	-				-1.3
1,187,995	-				-1.0
1,188,017	-				-1.0
1,188,017	-				-1.2
1,188,088	-				+0.6
1,188,088	-				+0.4
1,188,089	+				-1.0
1,188,090	-				+0.3
1,188,090	-				-2.2
1,188,090	-				+0.2
1,188,090	-				+1.1
1,188,090	-				-1.3
1,188,090	-				+0.5
1,188,090	-				-0.3
1,188,144	-				-0.6
1,188,174	-				-1.5
1,188,174	-				+2.2
1,188,175	+				-0.6
1,188,176	-				-0.6
1,188,176	-				+1.0
1,188,176	-				-1.1
1,188,176	-				+0.7
1,188,177	+				-0.6
1,188,177	+				+0.0
1,188,178	-				-0.3
1,188,178	-				-2.6
1,188,178	-				-0.5
1,188,178	-				+1.7
1,188,178	-				-1.8
1,188,241	+				-2.0
1,188,241	+				-0.6
1,188,241	+				-1.2
1,188,241	+				+0.2
1,188,241	+				-1.5
1,188,241	+				+0.6
1,188,242	-				-1.6
1,188,242	-				+0.0
1,188,242	-				-2.2
1,188,242	-				-0.2
1,188,242	-				-2.2
1,188,242	-				-0.4
1,188,242	-				+0.1
1,188,242	-				-0.9
1,188,242	-				+1.1
1,188,272	+				-1.6
1,188,272	+				-2.0
1,188,272	+				+0.2
1,188,273	-				-0.7
1,188,273	-				-0.1
1,188,276	+				+1.0
1,188,276	+				-0.6
1,188,276	+				-1.3
1,188,276	+				+0.0
1,188,276	+				+0.0
1,188,276	+				-0.4
1,188,276	+				-1.3
1,188,277	-				+0.5
1,188,277	-				-1.6
1,188,277	-				-1.6
1,188,277	-				-2.7
1,188,277	-				+0.0
1,188,277	-				+0.8
1,188,277	-				+0.0
1,188,278	+				+1.5
1,188,278	+				-0.1
1,188,278	+				-0.4
1,188,278	+				-1.7
1,188,278	+				-1.6
1,188,278	+				-2.6
1,188,279	-				+0.2
1,188,279	-				-1.6
1,188,279	-				+2.3
1,188,334	+				+1.7
1,188,334	+				-0.7
1,188,334	+				-0.6
1,188,334	+				+1.3
1,188,334	+				-0.3
1,188,334	+				-0.2
1,188,335	-				-2.0
1,188,335	-				+0.8
1,188,335	-				-0.9
1,188,335	-				-0.2
1,188,346	+				-0.5
1,188,346	+				-0.6
1,188,346	+				+1.0
1,188,346	+				+0.3
1,188,346	+				-0.1
1,188,346	+				+0.2
1,188,346	+				+1.7
1,188,346	+				-0.7
1,188,346	+				-1.3
1,188,347	-				-0.6
1,188,347	-				+1.0
1,188,347	-				-0.8
1,188,347	-				-2.2
1,188,347	-				+3.0
1,188,347	-				+0.1
1,188,347	-				-0.3
1,188,347	-				+1.5
1,188,347	-				-0.2
1,188,347	-				+0.0
1,188,350	+				-0.5
1,188,350	+				+1.0
1,188,350	+				-0.8
1,188,350	+				-2.6
1,188,350	+				-1.3
1,188,350	+				-0.1
1,188,350	+				-0.3
1,188,350	+				+1.0
1,188,350	+				-1.3
1,188,350	+				-0.2
1,188,350	+				-0.8
1,188,350	+				-0.6
1,188,350	+				-0.2
1,188,350	+				+0.1
1,188,350	+				-0.8
1,188,350	+				-0.4
1,188,351	-				+0.4
1,188,351	-				+0.7
1,188,351	-				-0.6
1,188,351	-				+0.0
1,188,351	-				+1.0
1,188,351	-				+0.8
1,188,351	-				+0.8
1,188,351	-				+1.3
1,188,351	-				-1.0
1,188,352	+				+0.9
1,188,352	+				-1.6
1,188,352	+				-0.4
1,188,352	+				+0.0
1,188,352	+				-1.8
1,188,352	+				-2.5
1,188,352	+				+2.0
1,188,352	+				+1.0
1,188,352	+				+1.6
1,188,352	+				-0.3
1,188,352	+				-0.1
1,188,353	-				+0.3
1,188,353	-				-2.8
1,188,353	-				+3.6
1,188,353	-				-0.7
1,188,353	-				+0.3
1,188,353	-				+0.8
1,188,353	-				+1.1
1,188,353	-				-0.2
1,188,353	-				+0.1
1,188,353	-				+0.4
1,188,353	-				+4.1
1,188,353	-				+0.7
1,188,353	-				-0.3
1,188,353	-				+1.2
1,188,354	+				+0.3
1,188,354	+				+0.2
1,188,354	+				+1.0
1,188,354	+				+1.8
1,188,354	+				+1.2
1,188,354	+				+2.0
1,188,354	+				-1.9
1,188,354	+				-2.3
1,188,354	+				+0.7
1,188,354	+				-0.3
1,188,354	+				+0.8
1,188,354	+				+1.5
1,188,354	+				+1.0
1,188,354	+				-2.0
1,188,354	+				-1.0
1,188,354	+				+2.0
1,188,354	+				+0.0
1,188,354	+				-1.7
1,188,354	+				+1.3
1,188,354	+				+1.0
1,188,354	+				-0.9
1,188,354	+				-0.2
1,188,354	+				+2.0
1,188,354	+				-0.6
1,188,354	+				-0.7
1,188,354	+				-0.9
1,188,354	+				-0.9
1,188,354	+				+0.0
1,188,354	+				-0.6
1,188,354	+				-1.3
1,188,355	-				+0.3
1,188,355	-				-1.3
1,188,355	-				-0.7
1,188,355	-				+2.8
1,188,355	-				+1.5
1,188,355	-				-2.5
1,188,355	-				-2.2
1,188,355	-				-1.3
1,188,355	-				+1.0
1,188,355	-				-1.0
1,188,355	-				-1.8
1,188,355	-				+0.1
1,188,355	-				+0.4
1,188,355	-				-0.7
1,188,355	-				-3.0
1,188,358	+				+1.9
1,188,358	+				+0.2
1,188,358	+				+2.8
1,188,358	+				-0.3
1,188,359	-				-1.3
1,188,359	-				+1.6
1,188,359	-				-0.6
1,188,359	-				-2.3
1,188,442	-				+0.4