Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003424

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_003423 and ABIE53_003424 are separated by 107 nucleotidesABIE53_003424 and ABIE53_003425 are separated by 54 nucleotides ABIE53_003423: ABIE53_003423 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,851,781 to 3,852,977 _003423 ABIE53_003424: ABIE53_003424 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 3,853,085 to 3,853,603 _003424 ABIE53_003425: ABIE53_003425 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 3,853,658 to 3,854,548 _003425 Position (kb) 3853 3854Strain fitness (log2 ratio) -2 -1 0 1at 3853.039 kb on - strandat 3853.039 kb on - strandat 3853.062 kb on - strandat 3853.062 kb on - strandat 3853.635 kb on - strandat 3853.635 kb on - strandat 3853.635 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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3,853,039 - -1.7
3,853,039 - -0.3
3,853,062 - -0.9
3,853,062 - -0.1
3,853,635 - +1.3
3,853,635 - -0.5
3,853,635 - -2.4

Or see this region's nucleotide sequence