Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3171

Experiment: MoYLS4 with Furfuryl Alcohol 0.25 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3170 and DvMF_3171 are separated by 203 nucleotidesDvMF_3171 and DvMF_3172 are separated by 387 nucleotides DvMF_3170: DvMF_3170 - heavy metal translocating P-type ATPase (RefSeq), at 3,995,779 to 3,998,589 _3170 DvMF_3171: DvMF_3171 - hypothetical protein (RefSeq), at 3,998,793 to 3,999,215 _3171 DvMF_3172: DvMF_3172 - UTP--glucose-1-phosphate uridylyltransferase (RefSeq), at 3,999,603 to 4,001,006 _3172 Position (kb) 3998 3999 4000Strain fitness (log2 ratio) -1 0 1at 3997.881 kb on + strand, within DvMF_3170at 3997.994 kb on - strand, within DvMF_3170at 3998.176 kb on + strand, within DvMF_3170at 3998.204 kb on + strand, within DvMF_3170at 3998.251 kb on - strand, within DvMF_3170at 3998.271 kb on - strand, within DvMF_3170at 3998.353 kb on + strandat 3998.551 kb on + strandat 3998.551 kb on + strandat 3999.170 kb on - strand, within DvMF_3171at 3999.393 kb on + strandat 3999.481 kb on - strandat 3999.742 kb on - strandat 3999.784 kb on + strand, within DvMF_3172at 3999.890 kb on + strand, within DvMF_3172at 3999.968 kb on - strand, within DvMF_3172at 4000.109 kb on - strand, within DvMF_3172

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.25 %
remove
3,997,881 + DvMF_3170 0.75 -0.4
3,997,994 - DvMF_3170 0.79 -0.0
3,998,176 + DvMF_3170 0.85 -0.4
3,998,204 + DvMF_3170 0.86 -0.6
3,998,251 - DvMF_3170 0.88 -0.7
3,998,271 - DvMF_3170 0.89 +0.3
3,998,353 + -1.5
3,998,551 + -0.5
3,998,551 + -0.7
3,999,170 - DvMF_3171 0.89 +0.7
3,999,393 + +0.8
3,999,481 - +0.3
3,999,742 - -0.6
3,999,784 + DvMF_3172 0.13 -0.2
3,999,890 + DvMF_3172 0.20 -1.5
3,999,968 - DvMF_3172 0.26 -0.8
4,000,109 - DvMF_3172 0.36 +0.1

Or see this region's nucleotide sequence