Experiment: MoYLS4 with Furfuryl Alcohol 0.25 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3104 and rpmB are separated by 241 nucleotides rpmB and DvMF_3106 are separated by 147 nucleotides DvMF_3106 and DvMF_3107 are separated by 332 nucleotides
DvMF_3104: DvMF_3104 - protein of unknown function DUF177 (RefSeq), at 3,916,156 to 3,916,767
_3104
DvMF_3105: rpmB - 50S ribosomal protein L28 (RefSeq), at 3,917,009 to 3,917,218
rpmB
DvMF_3106: DvMF_3106 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,917,366 to 3,918,346
_3106
DvMF_3107: DvMF_3107 - FxsA cytoplasmic membrane protein (RefSeq), at 3,918,679 to 3,919,440
_3107
Position (kb)
3917
3918
3919 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3916.436 kb on + strand, within DvMF_3104 at 3916.734 kb on + strand at 3916.854 kb on - strand at 3917.376 kb on - strand at 3917.407 kb on - strand at 3917.479 kb on + strand, within DvMF_3106 at 3917.705 kb on - strand, within DvMF_3106 at 3918.110 kb on + strand, within DvMF_3106 at 3918.111 kb on - strand, within DvMF_3106 at 3918.242 kb on + strand, within DvMF_3106 at 3918.263 kb on + strand at 3918.273 kb on - strand at 3918.658 kb on - strand at 3918.676 kb on + strand at 3918.692 kb on + strand at 3919.185 kb on - strand, within DvMF_3107 at 3919.220 kb on + strand, within DvMF_3107
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.25 % remove 3,916,436 + DvMF_3104 0.46 -0.0 3,916,734 + +2.0 3,916,854 - -0.8 3,917,376 - +0.2 3,917,407 - -0.6 3,917,479 + DvMF_3106 0.12 -0.5 3,917,705 - DvMF_3106 0.35 -0.1 3,918,110 + DvMF_3106 0.76 -1.7 3,918,111 - DvMF_3106 0.76 -0.8 3,918,242 + DvMF_3106 0.89 -1.4 3,918,263 + -0.3 3,918,273 - -0.5 3,918,658 - -0.0 3,918,676 + -0.0 3,918,692 + -1.8 3,919,185 - DvMF_3107 0.66 -0.4 3,919,220 + DvMF_3107 0.71 -0.2
Or see this region's nucleotide sequence