Experiment: MoYLS4 with Furfuryl Alcohol 0.25 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3002 and DvMF_3003 are separated by 119 nucleotides DvMF_3003 and DvMF_3004 are separated by 150 nucleotides DvMF_3004 and DvMF_3005 are separated by 197 nucleotides
DvMF_3002: DvMF_3002 - protein of unknown function DUF1009 (RefSeq), at 3,789,088 to 3,789,933
_3002
DvMF_3003: DvMF_3003 - putative transcriptional regulator, GntR family (RefSeq), at 3,790,053 to 3,791,237
_3003
DvMF_3004: DvMF_3004 - pyridoxamine 5'-phosphate oxidase-related FMN-binding protein (RefSeq), at 3,791,388 to 3,791,849
_3004
DvMF_3005: DvMF_3005 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 3,792,047 to 3,793,507
_3005
Position (kb)
3790
3791
3792 Strain fitness (log2 ratio)
-1
0
1 at 3790.256 kb on - strand, within DvMF_3003 at 3790.481 kb on - strand, within DvMF_3003 at 3790.503 kb on - strand, within DvMF_3003 at 3790.736 kb on + strand, within DvMF_3003 at 3790.736 kb on + strand, within DvMF_3003 at 3790.851 kb on - strand, within DvMF_3003 at 3790.927 kb on - strand, within DvMF_3003 at 3791.232 kb on + strand at 3791.240 kb on - strand at 3791.375 kb on - strand at 3791.385 kb on + strand at 3791.489 kb on - strand, within DvMF_3004 at 3791.587 kb on + strand, within DvMF_3004 at 3791.595 kb on - strand, within DvMF_3004 at 3791.614 kb on - strand, within DvMF_3004 at 3791.642 kb on + strand, within DvMF_3004 at 3792.050 kb on - strand at 3792.133 kb on + strand at 3792.139 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.25 % remove 3,790,256 - DvMF_3003 0.17 -1.4 3,790,481 - DvMF_3003 0.36 -1.2 3,790,503 - DvMF_3003 0.38 -0.4 3,790,736 + DvMF_3003 0.58 -0.5 3,790,736 + DvMF_3003 0.58 -0.5 3,790,851 - DvMF_3003 0.67 -0.2 3,790,927 - DvMF_3003 0.74 -0.4 3,791,232 + -0.3 3,791,240 - -0.3 3,791,375 - +0.3 3,791,385 + +0.0 3,791,489 - DvMF_3004 0.22 +0.2 3,791,587 + DvMF_3004 0.43 -0.9 3,791,595 - DvMF_3004 0.45 -0.7 3,791,614 - DvMF_3004 0.49 -0.5 3,791,642 + DvMF_3004 0.55 -0.1 3,792,050 - +1.4 3,792,133 + +0.3 3,792,139 + -0.8
Or see this region's nucleotide sequence