Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2843

Experiment: MoYLS4 with Furfuryl Alcohol 0.25 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2841 and DvMF_2842 are separated by 219 nucleotidesDvMF_2842 and DvMF_2843 are separated by 179 nucleotidesDvMF_2843 and DvMF_2844 are separated by 19 nucleotides DvMF_2841: DvMF_2841 - response regulator receiver protein (RefSeq), at 3,589,572 to 3,590,009 _2841 DvMF_2842: DvMF_2842 - hypothetical protein (RefSeq), at 3,590,229 to 3,590,525 _2842 DvMF_2843: DvMF_2843 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,590,705 to 3,592,348 _2843 DvMF_2844: DvMF_2844 - histidine kinase (RefSeq), at 3,592,368 to 3,594,029 _2844 Position (kb) 3590 3591 3592 3593Strain fitness (log2 ratio) -1 0 1at 3589.717 kb on + strand, within DvMF_2841at 3589.817 kb on - strand, within DvMF_2841at 3589.820 kb on - strand, within DvMF_2841at 3590.198 kb on + strandat 3590.242 kb on + strandat 3590.439 kb on - strand, within DvMF_2842at 3590.451 kb on - strand, within DvMF_2842at 3590.454 kb on + strand, within DvMF_2842at 3590.471 kb on + strand, within DvMF_2842at 3590.511 kb on - strandat 3590.539 kb on - strandat 3590.875 kb on + strand, within DvMF_2843at 3590.883 kb on - strand, within DvMF_2843at 3590.942 kb on - strand, within DvMF_2843at 3590.978 kb on - strand, within DvMF_2843at 3591.011 kb on + strand, within DvMF_2843at 3591.054 kb on + strand, within DvMF_2843at 3591.300 kb on + strand, within DvMF_2843at 3591.390 kb on + strand, within DvMF_2843at 3591.467 kb on + strand, within DvMF_2843at 3591.573 kb on + strand, within DvMF_2843at 3591.581 kb on - strand, within DvMF_2843at 3591.715 kb on - strand, within DvMF_2843at 3591.746 kb on - strand, within DvMF_2843at 3591.753 kb on + strand, within DvMF_2843at 3591.768 kb on + strand, within DvMF_2843at 3591.781 kb on - strand, within DvMF_2843at 3591.790 kb on + strand, within DvMF_2843at 3592.407 kb on - strandat 3592.412 kb on - strandat 3592.532 kb on + strandat 3592.584 kb on + strand, within DvMF_2844at 3593.059 kb on + strand, within DvMF_2844at 3593.170 kb on - strand, within DvMF_2844at 3593.181 kb on + strand, within DvMF_2844at 3593.195 kb on + strand, within DvMF_2844

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.25 %
remove
3,589,717 + DvMF_2841 0.33 -1.3
3,589,817 - DvMF_2841 0.56 -1.4
3,589,820 - DvMF_2841 0.57 -1.4
3,590,198 + -1.1
3,590,242 + +0.8
3,590,439 - DvMF_2842 0.71 +0.4
3,590,451 - DvMF_2842 0.75 +0.8
3,590,454 + DvMF_2842 0.76 +0.9
3,590,471 + DvMF_2842 0.81 +1.3
3,590,511 - +1.1
3,590,539 - +0.8
3,590,875 + DvMF_2843 0.10 +1.3
3,590,883 - DvMF_2843 0.11 +0.7
3,590,942 - DvMF_2843 0.14 +0.7
3,590,978 - DvMF_2843 0.17 +0.8
3,591,011 + DvMF_2843 0.19 +0.9
3,591,054 + DvMF_2843 0.21 +0.6
3,591,300 + DvMF_2843 0.36 +0.2
3,591,390 + DvMF_2843 0.42 +1.3
3,591,467 + DvMF_2843 0.46 +0.4
3,591,573 + DvMF_2843 0.53 +0.8
3,591,581 - DvMF_2843 0.53 +0.9
3,591,715 - DvMF_2843 0.61 +0.7
3,591,746 - DvMF_2843 0.63 +1.0
3,591,753 + DvMF_2843 0.64 +0.9
3,591,768 + DvMF_2843 0.65 +0.6
3,591,781 - DvMF_2843 0.65 +0.8
3,591,790 + DvMF_2843 0.66 +0.5
3,592,407 - +0.5
3,592,412 - +0.8
3,592,532 + +0.7
3,592,584 + DvMF_2844 0.13 +1.4
3,593,059 + DvMF_2844 0.42 +0.7
3,593,170 - DvMF_2844 0.48 +1.6
3,593,181 + DvMF_2844 0.49 +1.0
3,593,195 + DvMF_2844 0.50 +1.4

Or see this region's nucleotide sequence