Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1083

Experiment: MoYLS4 with Furfuryl Alcohol 0.25 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1081 and DvMF_1082 are separated by 142 nucleotidesDvMF_1082 and DvMF_1083 are separated by 391 nucleotidesDvMF_1083 and DvMF_1084 are separated by 238 nucleotides DvMF_1081: DvMF_1081 - hypothetical protein (RefSeq), at 1,321,096 to 1,321,299 _1081 DvMF_1082: DvMF_1082 - hypothetical protein (RefSeq), at 1,321,442 to 1,321,846 _1082 DvMF_1083: DvMF_1083 - TPR repeat-containing protein (RefSeq), at 1,322,238 to 1,322,894 _1083 DvMF_1084: DvMF_1084 - OmpA/MotB domain protein (RefSeq), at 1,323,133 to 1,323,858 _1084 Position (kb) 1322 1323Strain fitness (log2 ratio) -1 0 1 2at 1321.578 kb on - strand, within DvMF_1082at 1321.786 kb on + strand, within DvMF_1082at 1321.832 kb on - strandat 1321.897 kb on + strandat 1323.225 kb on + strand, within DvMF_1084at 1323.226 kb on - strand, within DvMF_1084at 1323.249 kb on + strand, within DvMF_1084at 1323.257 kb on - strand, within DvMF_1084at 1323.299 kb on - strand, within DvMF_1084at 1323.396 kb on + strand, within DvMF_1084at 1323.404 kb on - strand, within DvMF_1084at 1323.490 kb on - strand, within DvMF_1084

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.25 %
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1,321,578 - DvMF_1082 0.34 -0.3
1,321,786 + DvMF_1082 0.85 -0.3
1,321,832 - -0.2
1,321,897 + +0.4
1,323,225 + DvMF_1084 0.13 +1.3
1,323,226 - DvMF_1084 0.13 +2.4
1,323,249 + DvMF_1084 0.16 +1.7
1,323,257 - DvMF_1084 0.17 +1.5
1,323,299 - DvMF_1084 0.23 +1.6
1,323,396 + DvMF_1084 0.36 +1.4
1,323,404 - DvMF_1084 0.37 +1.4
1,323,490 - DvMF_1084 0.49 +1.5

Or see this region's nucleotide sequence