Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0876

Experiment: MoYLS4 with Furfuryl Alcohol 0.25 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0875 and recA are separated by 300 nucleotidesrecA and alaS are separated by 104 nucleotides DvMF_0875: DvMF_0875 - thiamine biosynthesis protein (RefSeq), at 1,055,529 to 1,056,635 _0875 DvMF_0876: recA - recombinase A (RefSeq), at 1,056,936 to 1,058,009 recA DvMF_0877: alaS - alanyl-tRNA synthetase (RefSeq), at 1,058,114 to 1,060,753 alaS Position (kb) 1056 1057 1058 1059Strain fitness (log2 ratio) -2 -1 0 1at 1056.005 kb on + strand, within DvMF_0875at 1056.389 kb on - strand, within DvMF_0875at 1056.389 kb on - strand, within DvMF_0875at 1056.441 kb on + strand, within DvMF_0875at 1056.452 kb on + strand, within DvMF_0875at 1056.623 kb on - strandat 1056.698 kb on + strandat 1056.768 kb on + strandat 1056.801 kb on - strandat 1057.624 kb on + strand, within recAat 1057.696 kb on - strand, within recAat 1057.751 kb on - strand, within recAat 1057.809 kb on + strand, within recAat 1057.857 kb on - strand, within recA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.25 %
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1,056,005 + DvMF_0875 0.43 -2.3
1,056,389 - DvMF_0875 0.78 -0.4
1,056,389 - DvMF_0875 0.78 -0.5
1,056,441 + DvMF_0875 0.82 -0.0
1,056,452 + DvMF_0875 0.83 +0.3
1,056,623 - -0.5
1,056,698 + +0.1
1,056,768 + +0.1
1,056,801 - -1.0
1,057,624 + recA DvMF_0876 0.64 -2.2
1,057,696 - recA DvMF_0876 0.71 -1.8
1,057,751 - recA DvMF_0876 0.76 -1.4
1,057,809 + recA DvMF_0876 0.81 -0.5
1,057,857 - recA DvMF_0876 0.86 -0.4

Or see this region's nucleotide sequence