Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0794

Experiment: MoYLS4 with Furfuryl Alcohol 0.25 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0793 and DvMF_0794 are separated by 502 nucleotidesDvMF_0794 and DvMF_0795 are separated by 292 nucleotides DvMF_0793: DvMF_0793 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 956,092 to 957,840 _0793 DvMF_0794: DvMF_0794 - transcriptional regulator, XRE family (RefSeq), at 958,343 to 958,648 _0794 DvMF_0795: DvMF_0795 - Calcium-binding EF-hand-containing protein (RefSeq), at 958,941 to 960,131 _0795 Position (kb) 958 959Strain fitness (log2 ratio) -1 0 1 2at 957.987 kb on - strandat 958.487 kb on - strand, within DvMF_0794at 958.542 kb on - strand, within DvMF_0794at 958.686 kb on + strandat 958.694 kb on - strandat 958.705 kb on + strandat 958.841 kb on - strandat 958.906 kb on - strandat 958.910 kb on + strandat 959.033 kb on + strandat 959.206 kb on - strand, within DvMF_0795at 959.329 kb on - strand, within DvMF_0795at 959.417 kb on + strand, within DvMF_0795at 959.519 kb on - strand, within DvMF_0795

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.25 %
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957,987 - +0.4
958,487 - DvMF_0794 0.47 +2.1
958,542 - DvMF_0794 0.65 +1.0
958,686 + -0.3
958,694 - -0.6
958,705 + +0.3
958,841 - +0.4
958,906 - -0.0
958,910 + -0.3
959,033 + -0.1
959,206 - DvMF_0795 0.22 -0.9
959,329 - DvMF_0795 0.33 +0.1
959,417 + DvMF_0795 0.40 -0.6
959,519 - DvMF_0795 0.49 -0.5

Or see this region's nucleotide sequence