Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0118

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntescJ and DORF2116 are separated by 6 nucleotidesDORF2116 and DVUA0118 overlap by 22 nucleotidesDVUA0118 and sctN are separated by 327 nucleotides DVUA0117: escJ - type III secretion lipoprotein (TIGR), at 154,970 to 155,785 escJ DORF2116: DORF2116 - SEED: FIG00606188: hypothetical protein, at 155,792 to 156,715 DORF2116 DVUA0118: DVUA0118 - type III secretion protein, YopL family (TIGR), at 156,694 to 157,311 DVUA0118 DVUA0119: sctN - type III secretion system ATPase (TIGR), at 157,639 to 158,955 sctN Position (kb) 156 157 158Strain fitness (log2 ratio) -1 0 1at 155.765 kb on + strandat 155.775 kb on + strandat 155.780 kb on + strandat 155.839 kb on + strandat 155.839 kb on + strandat 155.847 kb on - strandat 156.146 kb on + strand, within DORF2116at 156.160 kb on + strand, within DORF2116at 156.206 kb on - strand, within DORF2116at 156.231 kb on + strand, within DORF2116at 156.231 kb on + strand, within DORF2116at 156.235 kb on + strand, within DORF2116at 156.236 kb on + strand, within DORF2116at 156.254 kb on + strand, within DORF2116at 156.325 kb on - strand, within DORF2116at 156.339 kb on - strand, within DORF2116at 156.344 kb on + strand, within DORF2116at 156.419 kb on + strand, within DORF2116at 156.419 kb on + strand, within DORF2116at 156.574 kb on + strand, within DORF2116at 156.608 kb on - strand, within DORF2116at 156.713 kb on - strandat 156.887 kb on + strand, within DVUA0118at 156.895 kb on - strand, within DVUA0118at 156.922 kb on + strand, within DVUA0118at 156.934 kb on + strand, within DVUA0118at 156.949 kb on - strand, within DVUA0118at 157.445 kb on - strandat 157.459 kb on + strandat 157.474 kb on + strandat 157.482 kb on - strandat 157.482 kb on - strandat 157.562 kb on - strandat 157.607 kb on + strandat 157.665 kb on - strandat 157.840 kb on + strand, within sctNat 157.863 kb on + strand, within sctNat 157.870 kb on + strand, within sctNat 157.896 kb on + strand, within sctNat 157.904 kb on - strand, within sctNat 158.034 kb on + strand, within sctNat 158.042 kb on - strand, within sctNat 158.066 kb on + strand, within sctNat 158.092 kb on + strand, within sctNat 158.109 kb on - strand, within sctNat 158.119 kb on + strand, within sctNat 158.242 kb on - strand, within sctNat 158.242 kb on - strand, within sctNat 158.270 kb on + strand, within sctNat 158.304 kb on + strand, within sctN

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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155,765 + -0.1
155,775 + -0.8
155,780 + -0.7
155,839 + -0.5
155,839 + -1.1
155,847 - +0.7
156,146 + DORF2116 0.38 -0.8
156,160 + DORF2116 0.40 -0.2
156,206 - DORF2116 0.45 +0.1
156,231 + DORF2116 0.48 -0.3
156,231 + DORF2116 0.48 -0.1
156,235 + DORF2116 0.48 -0.8
156,236 + DORF2116 0.48 +0.4
156,254 + DORF2116 0.50 -0.1
156,325 - DORF2116 0.58 -0.7
156,339 - DORF2116 0.59 -0.3
156,344 + DORF2116 0.60 +0.4
156,419 + DORF2116 0.68 -0.2
156,419 + DORF2116 0.68 +0.1
156,574 + DORF2116 0.85 +1.1
156,608 - DORF2116 0.88 -1.2
156,713 - +0.4
156,887 + DVUA0118 0.31 -1.1
156,895 - DVUA0118 0.33 -1.2
156,922 + DVUA0118 0.37 -1.2
156,934 + DVUA0118 0.39 +0.1
156,949 - DVUA0118 0.41 -0.1
157,445 - -0.9
157,459 + -0.5
157,474 + -0.2
157,482 - -0.4
157,482 - -1.1
157,562 - -0.5
157,607 + -0.1
157,665 - -1.0
157,840 + sctN DVUA0119 0.15 -0.9
157,863 + sctN DVUA0119 0.17 -1.5
157,870 + sctN DVUA0119 0.18 +0.3
157,896 + sctN DVUA0119 0.20 -1.7
157,904 - sctN DVUA0119 0.20 -0.7
158,034 + sctN DVUA0119 0.30 -1.7
158,042 - sctN DVUA0119 0.31 -0.5
158,066 + sctN DVUA0119 0.32 +0.7
158,092 + sctN DVUA0119 0.34 +0.0
158,109 - sctN DVUA0119 0.36 -0.7
158,119 + sctN DVUA0119 0.36 -0.9
158,242 - sctN DVUA0119 0.46 +1.3
158,242 - sctN DVUA0119 0.46 +1.2
158,270 + sctN DVUA0119 0.48 -0.8
158,304 + sctN DVUA0119 0.50 -0.2

Or see this region's nucleotide sequence