Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0029

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0025 and DVUA0028 are separated by 345 nucleotidesDVUA0028 and DVUA0029 are separated by 120 nucleotidesDVUA0029 and DVUA0030 are separated by 522 nucleotides DVUA0025: DVUA0025 - response regulator receiver domain protein (TIGR), at 30,780 to 31,241 DVUA0025 DVUA0028: DVUA0028 - hypothetical protein (TIGR), at 31,587 to 31,997 DVUA0028 DVUA0029: DVUA0029 - hypothetical protein (TIGR), at 32,118 to 32,798 DVUA0029 DVUA0030: DVUA0030 - hypothetical protein (TIGR), at 33,321 to 34,022 DVUA0030 Position (kb) 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 31.205 kb on + strandat 31.208 kb on - strandat 31.213 kb on - strandat 31.213 kb on - strandat 31.271 kb on - strandat 31.306 kb on - strandat 31.635 kb on - strand, within DVUA0028at 31.635 kb on - strand, within DVUA0028at 31.635 kb on - strand, within DVUA0028at 31.660 kb on + strand, within DVUA0028at 32.389 kb on + strand, within DVUA0029at 32.503 kb on - strand, within DVUA0029at 32.508 kb on + strand, within DVUA0029at 32.528 kb on - strand, within DVUA0029at 32.543 kb on - strand, within DVUA0029at 32.560 kb on + strand, within DVUA0029at 32.568 kb on - strand, within DVUA0029at 32.662 kb on - strand, within DVUA0029at 32.678 kb on + strand, within DVUA0029at 32.742 kb on + strandat 32.761 kb on - strandat 32.813 kb on + strandat 32.818 kb on + strandat 32.821 kb on - strandat 32.821 kb on - strandat 32.837 kb on - strandat 32.850 kb on + strandat 32.869 kb on - strandat 32.871 kb on - strandat 32.885 kb on + strandat 32.903 kb on - strandat 32.922 kb on + strandat 32.953 kb on + strandat 33.001 kb on + strandat 33.017 kb on - strandat 33.034 kb on + strandat 33.052 kb on - strandat 33.061 kb on - strandat 33.113 kb on + strandat 33.121 kb on - strandat 33.121 kb on - strandat 33.121 kb on - strandat 33.139 kb on + strandat 33.147 kb on - strandat 33.173 kb on - strandat 33.315 kb on + strandat 33.352 kb on - strandat 33.449 kb on + strand, within DVUA0030at 33.468 kb on + strand, within DVUA0030at 33.494 kb on + strand, within DVUA0030at 33.556 kb on + strand, within DVUA0030at 33.702 kb on + strand, within DVUA0030at 33.710 kb on - strand, within DVUA0030at 33.726 kb on + strand, within DVUA0030at 33.734 kb on - strand, within DVUA0030at 33.739 kb on - strand, within DVUA0030at 33.788 kb on + strand, within DVUA0030at 33.796 kb on - strand, within DVUA0030at 33.796 kb on - strand, within DVUA0030at 33.796 kb on - strand, within DVUA0030

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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31,205 + -0.3
31,208 - +0.2
31,213 - -0.7
31,213 - -0.2
31,271 - +0.6
31,306 - -0.6
31,635 - DVUA0028 0.12 +0.0
31,635 - DVUA0028 0.12 -0.9
31,635 - DVUA0028 0.12 -0.5
31,660 + DVUA0028 0.18 -0.5
32,389 + DVUA0029 0.40 +0.0
32,503 - DVUA0029 0.57 +1.7
32,508 + DVUA0029 0.57 -0.1
32,528 - DVUA0029 0.60 +1.1
32,543 - DVUA0029 0.62 +0.1
32,560 + DVUA0029 0.65 +0.5
32,568 - DVUA0029 0.66 -0.4
32,662 - DVUA0029 0.80 +0.7
32,678 + DVUA0029 0.82 -0.1
32,742 + -0.2
32,761 - -0.1
32,813 + +1.3
32,818 + -0.1
32,821 - -1.3
32,821 - +0.6
32,837 - -1.0
32,850 + -0.5
32,869 - +0.1
32,871 - -0.9
32,885 + +1.4
32,903 - -0.5
32,922 + +0.5
32,953 + -0.2
33,001 + -0.5
33,017 - +0.6
33,034 + -0.7
33,052 - +0.7
33,061 - -0.1
33,113 + +0.6
33,121 - -2.2
33,121 - +0.8
33,121 - -2.2
33,139 + +0.2
33,147 - +0.9
33,173 - -0.6
33,315 + -1.1
33,352 - -0.2
33,449 + DVUA0030 0.18 -0.2
33,468 + DVUA0030 0.21 -0.7
33,494 + DVUA0030 0.25 -1.4
33,556 + DVUA0030 0.33 -0.0
33,702 + DVUA0030 0.54 +0.1
33,710 - DVUA0030 0.55 +0.4
33,726 + DVUA0030 0.58 +0.5
33,734 - DVUA0030 0.59 +0.4
33,739 - DVUA0030 0.60 -0.1
33,788 + DVUA0030 0.67 +1.5
33,796 - DVUA0030 0.68 -0.0
33,796 - DVUA0030 0.68 +2.5
33,796 - DVUA0030 0.68 -0.5

Or see this region's nucleotide sequence