Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0074

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0073 and DVUA0074 are separated by 90 nucleotidesDVUA0074 and DVUA0075 are separated by 87 nucleotides DVUA0073: DVUA0073 - asparagine synthase (glutamine-hydrolyzing), putative (TIGR), at 97,846 to 100,515 DVUA0073 DVUA0074: DVUA0074 - sulfotransferase family protein (TIGR), at 100,606 to 101,295 DVUA0074 DVUA0075: DVUA0075 - radical SAM domain protein (TIGR), at 101,383 to 102,789 DVUA0075 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1at 100.716 kb on + strand, within DVUA0074at 100.764 kb on - strand, within DVUA0074at 100.813 kb on - strand, within DVUA0074at 100.852 kb on + strand, within DVUA0074at 100.888 kb on - strand, within DVUA0074at 100.891 kb on + strand, within DVUA0074at 100.899 kb on - strand, within DVUA0074at 101.037 kb on - strand, within DVUA0074at 101.043 kb on - strand, within DVUA0074at 101.269 kb on + strandat 102.011 kb on + strand, within DVUA0075at 102.149 kb on + strand, within DVUA0075

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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100,716 + DVUA0074 0.16 -1.3
100,764 - DVUA0074 0.23 -1.8
100,813 - DVUA0074 0.30 +0.1
100,852 + DVUA0074 0.36 -0.1
100,888 - DVUA0074 0.41 -0.7
100,891 + DVUA0074 0.41 -1.1
100,899 - DVUA0074 0.42 -1.5
101,037 - DVUA0074 0.62 -0.6
101,043 - DVUA0074 0.63 +1.3
101,269 + +0.3
102,011 + DVUA0075 0.45 +1.3
102,149 + DVUA0075 0.54 -0.1

Or see this region's nucleotide sequence