Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0585

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0584 and DVU0585 are separated by 162 nucleotidesDVU0585 and DVU0586 are separated by 375 nucleotidesDVU0586 and fdnG-1 are separated by 17 nucleotides DVU0584: DVU0584 - transposase, putative (TIGR), at 649,341 to 650,213 DVU0584 DVU0585: DVU0585 - conserved hypothetical protein (TIGR), at 650,376 to 652,769 DVU0585 DVU0586: DVU0586 - hypothetical protein (TIGR), at 653,145 to 653,369 DVU0586 DVU0587: fdnG-1 - formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR), at 653,387 to 656,404 fdnG-1 Position (kb) 650 651 652 653Strain fitness (log2 ratio) -3 -2 -1 0 1at 649.499 kb on + strand, within DVU0584at 649.509 kb on + strand, within DVU0584at 649.539 kb on - strand, within DVU0584at 649.629 kb on - strand, within DVU0584at 649.713 kb on + strand, within DVU0584at 649.725 kb on + strand, within DVU0584at 649.733 kb on - strand, within DVU0584at 649.738 kb on + strand, within DVU0584at 649.746 kb on - strand, within DVU0584at 649.786 kb on + strand, within DVU0584at 649.799 kb on - strand, within DVU0584at 649.829 kb on - strand, within DVU0584at 649.893 kb on - strand, within DVU0584at 649.935 kb on - strand, within DVU0584at 649.951 kb on + strand, within DVU0584at 649.951 kb on - strand, within DVU0584at 649.993 kb on + strand, within DVU0584at 650.069 kb on + strand, within DVU0584at 650.077 kb on - strand, within DVU0584at 650.250 kb on + strandat 650.278 kb on - strandat 650.311 kb on - strandat 650.362 kb on - strandat 650.383 kb on + strandat 650.407 kb on + strandat 650.407 kb on + strandat 650.407 kb on + strandat 650.487 kb on - strandat 650.487 kb on - strandat 650.511 kb on + strandat 650.516 kb on + strandat 650.564 kb on - strandat 650.566 kb on + strandat 650.574 kb on - strandat 650.721 kb on + strand, within DVU0585at 650.724 kb on - strand, within DVU0585at 650.737 kb on - strand, within DVU0585at 650.743 kb on + strand, within DVU0585at 650.774 kb on + strand, within DVU0585at 650.897 kb on - strand, within DVU0585at 650.971 kb on + strand, within DVU0585at 651.046 kb on + strand, within DVU0585at 651.101 kb on - strand, within DVU0585at 651.205 kb on - strand, within DVU0585at 651.209 kb on - strand, within DVU0585at 651.226 kb on - strand, within DVU0585at 651.235 kb on + strand, within DVU0585at 651.235 kb on + strand, within DVU0585at 651.235 kb on + strand, within DVU0585at 651.235 kb on + strand, within DVU0585at 651.235 kb on + strand, within DVU0585at 651.243 kb on - strand, within DVU0585at 651.243 kb on - strand, within DVU0585at 651.243 kb on - strand, within DVU0585at 651.243 kb on - strand, within DVU0585at 651.243 kb on - strand, within DVU0585at 651.243 kb on - strand, within DVU0585at 651.243 kb on - strand, within DVU0585at 651.577 kb on - strand, within DVU0585at 651.641 kb on - strand, within DVU0585at 651.682 kb on + strand, within DVU0585at 651.683 kb on - strand, within DVU0585at 651.683 kb on - strand, within DVU0585at 651.958 kb on + strand, within DVU0585at 652.047 kb on + strand, within DVU0585at 652.090 kb on - strand, within DVU0585at 652.178 kb on - strand, within DVU0585at 652.287 kb on - strand, within DVU0585at 652.311 kb on + strand, within DVU0585at 652.356 kb on + strand, within DVU0585at 652.381 kb on + strand, within DVU0585at 652.399 kb on - strand, within DVU0585at 652.414 kb on + strand, within DVU0585at 652.454 kb on - strand, within DVU0585at 652.454 kb on - strand, within DVU0585at 652.454 kb on - strand, within DVU0585at 652.534 kb on - strandat 652.536 kb on + strandat 652.595 kb on - strandat 652.665 kb on + strandat 652.681 kb on - strandat 652.760 kb on - strandat 652.849 kb on - strandat 652.864 kb on + strandat 652.877 kb on - strandat 652.900 kb on + strandat 652.921 kb on - strandat 652.921 kb on - strandat 652.950 kb on + strandat 652.950 kb on + strandat 652.950 kb on + strandat 653.027 kb on + strandat 653.083 kb on - strandat 653.088 kb on - strandat 653.156 kb on + strandat 653.164 kb on - strandat 653.226 kb on - strand, within DVU0586at 653.302 kb on - strand, within DVU0586at 653.331 kb on - strand, within DVU0586at 653.331 kb on - strand, within DVU0586at 653.389 kb on - strandat 653.544 kb on + strandat 653.559 kb on - strandat 653.585 kb on + strandat 653.589 kb on - strandat 653.697 kb on + strand, within fdnG-1

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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649,499 + DVU0584 0.18 -0.1
649,509 + DVU0584 0.19 -0.9
649,539 - DVU0584 0.23 -0.7
649,629 - DVU0584 0.33 -0.2
649,713 + DVU0584 0.43 -2.3
649,725 + DVU0584 0.44 +0.0
649,733 - DVU0584 0.45 -0.2
649,738 + DVU0584 0.45 +0.3
649,746 - DVU0584 0.46 +1.3
649,786 + DVU0584 0.51 -0.3
649,799 - DVU0584 0.52 +0.5
649,829 - DVU0584 0.56 +1.5
649,893 - DVU0584 0.63 +0.0
649,935 - DVU0584 0.68 -1.6
649,951 + DVU0584 0.70 -0.3
649,951 - DVU0584 0.70 -0.7
649,993 + DVU0584 0.75 -0.1
650,069 + DVU0584 0.83 -0.5
650,077 - DVU0584 0.84 -2.8
650,250 + -1.2
650,278 - -1.1
650,311 - +0.7
650,362 - +0.1
650,383 + -0.4
650,407 + -1.2
650,407 + -0.3
650,407 + -1.1
650,487 - -1.0
650,487 - +0.4
650,511 + +0.0
650,516 + -0.5
650,564 - +0.2
650,566 + +0.1
650,574 - -0.5
650,721 + DVU0585 0.14 -0.2
650,724 - DVU0585 0.15 -0.8
650,737 - DVU0585 0.15 -0.3
650,743 + DVU0585 0.15 -0.4
650,774 + DVU0585 0.17 -0.4
650,897 - DVU0585 0.22 +0.7
650,971 + DVU0585 0.25 +0.9
651,046 + DVU0585 0.28 +0.2
651,101 - DVU0585 0.30 +0.5
651,205 - DVU0585 0.35 -1.0
651,209 - DVU0585 0.35 -0.1
651,226 - DVU0585 0.36 -0.1
651,235 + DVU0585 0.36 -1.0
651,235 + DVU0585 0.36 -0.7
651,235 + DVU0585 0.36 -0.7
651,235 + DVU0585 0.36 -0.0
651,235 + DVU0585 0.36 -0.5
651,243 - DVU0585 0.36 -1.3
651,243 - DVU0585 0.36 -0.1
651,243 - DVU0585 0.36 -0.4
651,243 - DVU0585 0.36 -0.7
651,243 - DVU0585 0.36 -0.8
651,243 - DVU0585 0.36 -0.1
651,243 - DVU0585 0.36 -1.2
651,577 - DVU0585 0.50 -0.4
651,641 - DVU0585 0.53 +0.3
651,682 + DVU0585 0.55 +0.1
651,683 - DVU0585 0.55 +1.0
651,683 - DVU0585 0.55 -0.5
651,958 + DVU0585 0.66 -1.9
652,047 + DVU0585 0.70 -1.4
652,090 - DVU0585 0.72 -0.0
652,178 - DVU0585 0.75 -2.1
652,287 - DVU0585 0.80 -0.7
652,311 + DVU0585 0.81 -1.4
652,356 + DVU0585 0.83 +0.3
652,381 + DVU0585 0.84 -1.1
652,399 - DVU0585 0.85 -1.1
652,414 + DVU0585 0.85 -1.4
652,454 - DVU0585 0.87 -0.4
652,454 - DVU0585 0.87 -0.1
652,454 - DVU0585 0.87 +1.4
652,534 - -1.0
652,536 + -0.4
652,595 - -0.3
652,665 + -2.6
652,681 - -1.9
652,760 - -0.3
652,849 - +1.0
652,864 + +0.7
652,877 - +0.7
652,900 + -0.8
652,921 - +0.3
652,921 - -0.0
652,950 + -0.4
652,950 + -0.1
652,950 + +0.7
653,027 + -1.5
653,083 - -1.6
653,088 - -1.1
653,156 + -0.2
653,164 - -0.3
653,226 - DVU0586 0.36 +1.2
653,302 - DVU0586 0.70 +0.7
653,331 - DVU0586 0.83 +0.5
653,331 - DVU0586 0.83 +0.2
653,389 - +0.2
653,544 + +0.6
653,559 - +0.2
653,585 + -0.7
653,589 - -0.6
653,697 + fdnG-1 DVU0587 0.10 +0.5

Or see this region's nucleotide sequence