Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0273

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0271 and DVU0272 are separated by 296 nucleotidesDVU0272 and DVU0273 are separated by 36 nucleotidesDVU0273 and DVU0274 are separated by 311 nucleotidesDVU0274 and DVU0275 are separated by 294 nucleotides DVU0271: DVU0271 - response regulator (TIGR), at 313,230 to 314,720 DVU0271 DVU0272: DVU0272 - hypothetical protein (TIGR), at 315,017 to 315,112 DVU0272 DVU0273: DVU0273 - conserved hypothetical protein (TIGR), at 315,149 to 316,666 DVU0273 DVU0274: DVU0274 - hypothetical protein (TIGR), at 316,978 to 317,349 DVU0274 DVU0275: DVU0275 - polysaccharide deacetylase family protein (TIGR), at 317,644 to 318,339 DVU0275 Position (kb) 315 316 317Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 314.173 kb on - strand, within DVU0271at 314.173 kb on - strand, within DVU0271at 314.212 kb on + strand, within DVU0271at 314.304 kb on + strand, within DVU0271at 314.310 kb on - strand, within DVU0271at 314.366 kb on - strand, within DVU0271at 314.452 kb on - strand, within DVU0271at 314.467 kb on + strand, within DVU0271at 314.499 kb on + strand, within DVU0271at 314.562 kb on + strand, within DVU0271at 314.562 kb on + strand, within DVU0271at 314.570 kb on - strand, within DVU0271at 314.572 kb on - strandat 314.640 kb on - strandat 314.680 kb on + strandat 314.714 kb on + strandat 314.714 kb on + strandat 314.714 kb on + strandat 314.714 kb on + strandat 314.714 kb on + strandat 314.714 kb on + strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.722 kb on - strandat 314.732 kb on - strandat 314.952 kb on - strandat 315.003 kb on + strandat 315.027 kb on - strand, within DVU0272at 315.047 kb on + strand, within DVU0272at 315.050 kb on - strand, within DVU0272at 315.050 kb on - strand, within DVU0272at 315.050 kb on - strand, within DVU0272at 315.055 kb on - strand, within DVU0272at 315.057 kb on - strand, within DVU0272at 315.094 kb on + strand, within DVU0272at 315.151 kb on + strandat 315.239 kb on - strandat 315.266 kb on + strandat 315.266 kb on + strandat 315.274 kb on - strandat 315.446 kb on + strand, within DVU0273at 315.543 kb on + strand, within DVU0273at 315.585 kb on + strand, within DVU0273at 315.585 kb on + strand, within DVU0273at 315.593 kb on - strand, within DVU0273at 315.632 kb on + strand, within DVU0273at 315.659 kb on - strand, within DVU0273at 315.691 kb on + strand, within DVU0273at 315.699 kb on - strand, within DVU0273at 315.699 kb on - strand, within DVU0273at 315.699 kb on - strand, within DVU0273at 315.699 kb on - strand, within DVU0273at 315.783 kb on - strand, within DVU0273at 315.886 kb on - strand, within DVU0273at 315.886 kb on - strand, within DVU0273at 315.907 kb on - strand, within DVU0273at 315.921 kb on - strand, within DVU0273at 315.949 kb on + strand, within DVU0273at 315.965 kb on - strand, within DVU0273at 315.967 kb on + strand, within DVU0273at 315.975 kb on - strand, within DVU0273at 315.982 kb on - strand, within DVU0273at 315.999 kb on - strand, within DVU0273at 316.138 kb on + strand, within DVU0273at 316.166 kb on - strand, within DVU0273at 316.202 kb on - strand, within DVU0273at 316.212 kb on + strand, within DVU0273at 316.238 kb on + strand, within DVU0273at 316.370 kb on - strand, within DVU0273at 316.379 kb on - strand, within DVU0273at 316.442 kb on - strand, within DVU0273at 316.475 kb on + strand, within DVU0273at 316.487 kb on + strand, within DVU0273at 316.487 kb on + strand, within DVU0273at 316.487 kb on + strand, within DVU0273at 316.495 kb on - strand, within DVU0273at 316.497 kb on - strand, within DVU0273at 316.508 kb on + strand, within DVU0273at 316.543 kb on + strandat 316.584 kb on - strandat 316.644 kb on - strandat 316.710 kb on - strandat 316.745 kb on - strandat 316.745 kb on - strandat 316.771 kb on - strandat 316.810 kb on + strandat 316.828 kb on - strandat 316.906 kb on - strandat 316.919 kb on + strandat 316.940 kb on + strandat 317.022 kb on + strand, within DVU0274at 317.055 kb on - strand, within DVU0274at 317.112 kb on - strand, within DVU0274at 317.164 kb on - strand, within DVU0274at 317.177 kb on + strand, within DVU0274at 317.234 kb on + strand, within DVU0274at 317.294 kb on - strand, within DVU0274at 317.367 kb on + strandat 317.367 kb on + strandat 317.375 kb on - strandat 317.515 kb on + strandat 317.523 kb on - strandat 317.555 kb on + strandat 317.563 kb on - strandat 317.593 kb on + strandat 317.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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314,173 - DVU0271 0.63 -0.3
314,173 - DVU0271 0.63 -1.5
314,212 + DVU0271 0.66 +0.5
314,304 + DVU0271 0.72 -0.4
314,310 - DVU0271 0.72 -0.2
314,366 - DVU0271 0.76 -0.6
314,452 - DVU0271 0.82 -0.0
314,467 + DVU0271 0.83 -0.4
314,499 + DVU0271 0.85 +0.9
314,562 + DVU0271 0.89 -2.1
314,562 + DVU0271 0.89 -1.0
314,570 - DVU0271 0.90 +1.0
314,572 - +0.1
314,640 - -0.6
314,680 + +0.4
314,714 + +0.3
314,714 + -0.6
314,714 + +0.4
314,714 + -0.3
314,714 + +0.6
314,714 + -3.4
314,722 - -1.4
314,722 - -0.9
314,722 - +0.4
314,722 - -0.3
314,722 - -1.2
314,722 - +0.6
314,722 - +1.5
314,722 - -1.2
314,722 - -0.6
314,722 - +0.1
314,722 - -1.0
314,732 - -0.3
314,952 - -0.8
315,003 + -2.1
315,027 - DVU0272 0.10 +0.1
315,047 + DVU0272 0.31 +1.1
315,050 - DVU0272 0.34 -0.5
315,050 - DVU0272 0.34 -1.3
315,050 - DVU0272 0.34 +0.1
315,055 - DVU0272 0.40 -0.0
315,057 - DVU0272 0.42 -0.1
315,094 + DVU0272 0.80 -0.9
315,151 + -2.0
315,239 - +0.9
315,266 + +1.1
315,266 + +0.8
315,274 - -2.3
315,446 + DVU0273 0.20 -1.1
315,543 + DVU0273 0.26 -0.0
315,585 + DVU0273 0.29 -0.4
315,585 + DVU0273 0.29 -0.6
315,593 - DVU0273 0.29 -1.3
315,632 + DVU0273 0.32 +0.0
315,659 - DVU0273 0.34 -0.1
315,691 + DVU0273 0.36 +0.6
315,699 - DVU0273 0.36 +0.0
315,699 - DVU0273 0.36 +0.3
315,699 - DVU0273 0.36 +0.7
315,699 - DVU0273 0.36 -0.0
315,783 - DVU0273 0.42 +0.2
315,886 - DVU0273 0.49 +0.1
315,886 - DVU0273 0.49 +0.2
315,907 - DVU0273 0.50 +0.3
315,921 - DVU0273 0.51 -0.1
315,949 + DVU0273 0.53 -0.1
315,965 - DVU0273 0.54 +0.7
315,967 + DVU0273 0.54 -0.2
315,975 - DVU0273 0.54 -0.2
315,982 - DVU0273 0.55 -0.0
315,999 - DVU0273 0.56 +2.5
316,138 + DVU0273 0.65 +0.4
316,166 - DVU0273 0.67 +0.7
316,202 - DVU0273 0.69 -0.5
316,212 + DVU0273 0.70 -0.1
316,238 + DVU0273 0.72 -1.4
316,370 - DVU0273 0.80 +0.0
316,379 - DVU0273 0.81 +0.0
316,442 - DVU0273 0.85 -0.7
316,475 + DVU0273 0.87 -1.6
316,487 + DVU0273 0.88 +0.5
316,487 + DVU0273 0.88 -1.1
316,487 + DVU0273 0.88 -1.3
316,495 - DVU0273 0.89 +1.0
316,497 - DVU0273 0.89 +0.4
316,508 + DVU0273 0.90 -0.2
316,543 + -0.4
316,584 - +0.8
316,644 - +0.4
316,710 - -1.2
316,745 - -1.5
316,745 - -0.3
316,771 - -0.6
316,810 + -0.6
316,828 - +0.3
316,906 - -1.4
316,919 + -2.4
316,940 + -0.5
317,022 + DVU0274 0.12 +0.1
317,055 - DVU0274 0.21 -0.5
317,112 - DVU0274 0.36 +0.4
317,164 - DVU0274 0.50 +0.9
317,177 + DVU0274 0.53 -0.2
317,234 + DVU0274 0.69 +0.1
317,294 - DVU0274 0.85 -0.2
317,367 + +0.8
317,367 + +0.6
317,375 - -1.7
317,515 + -0.3
317,523 - +0.1
317,555 + -0.1
317,563 - -0.6
317,593 + -0.3
317,634 - -0.4

Or see this region's nucleotide sequence