Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0129

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0128 and DVU0129 are separated by 244 nucleotidesDVU0129 and DORF25842 are separated by 50 nucleotidesDORF25842 and DVU0130 are separated by 8 nucleotides DVU0128: DVU0128 - membrane protein, putative (TIGR), at 164,190 to 165,248 DVU0128 DVU0129: DVU0129 - sensory box/HDIG domain protein (TIGR), at 165,493 to 166,851 DVU0129 DORF25842: DORF25842 - no description, at 166,902 to 167,021 DORF25842 DVU0130: DVU0130 - phosphoglycolate phosphatase, putative (TIGR), at 167,030 to 167,692 DVU0130 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2at 164.495 kb on - strand, within DVU0128at 164.501 kb on + strand, within DVU0128at 164.501 kb on + strand, within DVU0128at 164.501 kb on + strand, within DVU0128at 164.514 kb on + strand, within DVU0128at 164.527 kb on + strand, within DVU0128at 164.593 kb on + strand, within DVU0128at 164.742 kb on - strand, within DVU0128at 164.859 kb on - strand, within DVU0128at 165.006 kb on + strand, within DVU0128at 165.006 kb on + strand, within DVU0128at 165.014 kb on - strand, within DVU0128at 165.014 kb on - strand, within DVU0128at 165.063 kb on + strand, within DVU0128at 165.109 kb on - strand, within DVU0128at 165.119 kb on + strand, within DVU0128at 165.127 kb on + strand, within DVU0128at 165.257 kb on - strandat 165.302 kb on + strandat 165.361 kb on + strandat 165.518 kb on - strandat 165.646 kb on - strand, within DVU0129at 165.674 kb on + strand, within DVU0129at 165.697 kb on - strand, within DVU0129at 165.710 kb on + strand, within DVU0129at 165.710 kb on + strand, within DVU0129at 165.804 kb on + strand, within DVU0129at 165.811 kb on + strand, within DVU0129at 165.819 kb on - strand, within DVU0129at 165.869 kb on - strand, within DVU0129at 165.952 kb on + strand, within DVU0129at 166.133 kb on + strand, within DVU0129at 166.133 kb on + strand, within DVU0129at 166.152 kb on - strand, within DVU0129at 166.172 kb on - strand, within DVU0129at 166.278 kb on - strand, within DVU0129at 166.289 kb on + strand, within DVU0129at 166.385 kb on + strand, within DVU0129at 166.455 kb on + strand, within DVU0129at 166.463 kb on - strand, within DVU0129at 166.464 kb on + strand, within DVU0129at 166.510 kb on + strand, within DVU0129at 166.517 kb on + strand, within DVU0129at 166.523 kb on - strand, within DVU0129at 166.528 kb on - strand, within DVU0129at 166.533 kb on - strand, within DVU0129at 166.544 kb on + strand, within DVU0129at 166.557 kb on + strand, within DVU0129at 166.595 kb on + strand, within DVU0129at 166.735 kb on + strandat 166.770 kb on + strandat 166.780 kb on + strandat 166.788 kb on - strandat 166.788 kb on - strandat 166.839 kb on - strandat 166.882 kb on - strandat 166.896 kb on + strandat 166.907 kb on + strandat 166.917 kb on + strand, within DORF25842at 166.917 kb on + strand, within DORF25842at 166.917 kb on + strand, within DORF25842at 166.917 kb on + strand, within DORF25842at 166.925 kb on - strand, within DORF25842at 166.925 kb on - strand, within DORF25842at 166.925 kb on - strand, within DORF25842at 166.925 kb on - strand, within DORF25842at 166.986 kb on + strand, within DORF25842at 166.986 kb on + strand, within DORF25842at 166.994 kb on - strand, within DORF25842at 167.012 kb on - strandat 167.036 kb on - strandat 167.133 kb on + strand, within DVU0130at 167.148 kb on + strand, within DVU0130at 167.175 kb on - strand, within DVU0130at 167.194 kb on - strand, within DVU0130at 167.240 kb on + strand, within DVU0130at 167.245 kb on - strand, within DVU0130at 167.248 kb on - strand, within DVU0130at 167.308 kb on - strand, within DVU0130at 167.343 kb on + strand, within DVU0130at 167.350 kb on + strand, within DVU0130at 167.351 kb on - strand, within DVU0130at 167.381 kb on - strand, within DVU0130at 167.381 kb on - strand, within DVU0130at 167.398 kb on + strand, within DVU0130at 167.456 kb on + strand, within DVU0130at 167.464 kb on - strand, within DVU0130at 167.492 kb on - strand, within DVU0130at 167.497 kb on - strand, within DVU0130at 167.500 kb on + strand, within DVU0130at 167.513 kb on - strand, within DVU0130at 167.528 kb on + strand, within DVU0130at 167.528 kb on + strand, within DVU0130at 167.698 kb on + strandat 167.706 kb on - strandat 167.706 kb on - strandat 167.720 kb on + strandat 167.720 kb on + strandat 167.720 kb on + strandat 167.720 kb on + strandat 167.723 kb on - strandat 167.723 kb on - strandat 167.728 kb on - strandat 167.728 kb on - strandat 167.728 kb on - strandat 167.728 kb on - strandat 167.769 kb on - strandat 167.784 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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164,495 - DVU0128 0.29 +0.5
164,501 + DVU0128 0.29 -0.5
164,501 + DVU0128 0.29 +1.3
164,501 + DVU0128 0.29 +0.7
164,514 + DVU0128 0.31 +0.1
164,527 + DVU0128 0.32 -0.5
164,593 + DVU0128 0.38 +0.3
164,742 - DVU0128 0.52 -0.2
164,859 - DVU0128 0.63 -0.3
165,006 + DVU0128 0.77 +0.1
165,006 + DVU0128 0.77 -0.1
165,014 - DVU0128 0.78 +0.8
165,014 - DVU0128 0.78 +0.2
165,063 + DVU0128 0.82 -0.3
165,109 - DVU0128 0.87 -0.1
165,119 + DVU0128 0.88 -0.6
165,127 + DVU0128 0.88 -1.1
165,257 - +1.1
165,302 + -1.5
165,361 + +0.5
165,518 - +0.1
165,646 - DVU0129 0.11 +0.6
165,674 + DVU0129 0.13 +0.2
165,697 - DVU0129 0.15 +0.2
165,710 + DVU0129 0.16 -0.1
165,710 + DVU0129 0.16 +0.7
165,804 + DVU0129 0.23 -0.1
165,811 + DVU0129 0.23 +0.3
165,819 - DVU0129 0.24 +0.6
165,869 - DVU0129 0.28 -0.1
165,952 + DVU0129 0.34 -0.5
166,133 + DVU0129 0.47 -0.3
166,133 + DVU0129 0.47 -0.3
166,152 - DVU0129 0.48 -1.1
166,172 - DVU0129 0.50 +0.4
166,278 - DVU0129 0.58 -1.4
166,289 + DVU0129 0.59 +0.0
166,385 + DVU0129 0.66 +0.9
166,455 + DVU0129 0.71 +1.1
166,463 - DVU0129 0.71 +1.5
166,464 + DVU0129 0.71 +1.5
166,510 + DVU0129 0.75 -0.9
166,517 + DVU0129 0.75 -1.0
166,523 - DVU0129 0.76 -0.4
166,528 - DVU0129 0.76 -0.2
166,533 - DVU0129 0.77 -0.7
166,544 + DVU0129 0.77 +0.7
166,557 + DVU0129 0.78 -0.2
166,595 + DVU0129 0.81 +1.4
166,735 + -1.2
166,770 + +0.3
166,780 + -0.9
166,788 - +0.0
166,788 - -1.2
166,839 - +0.5
166,882 - -0.3
166,896 + -1.0
166,907 + +1.0
166,917 + DORF25842 0.12 -0.2
166,917 + DORF25842 0.12 -1.3
166,917 + DORF25842 0.12 -1.1
166,917 + DORF25842 0.12 -0.4
166,925 - DORF25842 0.19 -0.3
166,925 - DORF25842 0.19 -0.4
166,925 - DORF25842 0.19 -0.6
166,925 - DORF25842 0.19 -0.7
166,986 + DORF25842 0.70 -0.6
166,986 + DORF25842 0.70 -0.2
166,994 - DORF25842 0.77 +0.2
167,012 - -0.3
167,036 - -0.2
167,133 + DVU0130 0.16 -0.2
167,148 + DVU0130 0.18 +0.7
167,175 - DVU0130 0.22 -0.7
167,194 - DVU0130 0.25 -0.1
167,240 + DVU0130 0.32 -0.7
167,245 - DVU0130 0.32 -0.4
167,248 - DVU0130 0.33 +0.7
167,308 - DVU0130 0.42 -0.1
167,343 + DVU0130 0.47 +0.1
167,350 + DVU0130 0.48 +0.4
167,351 - DVU0130 0.48 -1.7
167,381 - DVU0130 0.53 +0.7
167,381 - DVU0130 0.53 +0.9
167,398 + DVU0130 0.56 +1.3
167,456 + DVU0130 0.64 -0.3
167,464 - DVU0130 0.65 +1.1
167,492 - DVU0130 0.70 +1.0
167,497 - DVU0130 0.70 +0.1
167,500 + DVU0130 0.71 -0.6
167,513 - DVU0130 0.73 -0.2
167,528 + DVU0130 0.75 +2.1
167,528 + DVU0130 0.75 -2.1
167,698 + -1.3
167,706 - -0.5
167,706 - -0.3
167,720 + -0.3
167,720 + -1.0
167,720 + -0.8
167,720 + -0.0
167,723 - -0.5
167,723 - -0.4
167,728 - -1.3
167,728 - -1.2
167,728 - -0.6
167,728 - -0.6
167,769 - +0.1
167,784 + -1.3

Or see this region's nucleotide sequence