Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0083

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0082 and DVU0083 are separated by 129 nucleotidesDVU0083 and DVU0084 are separated by 71 nucleotides DVU0082: DVU0082 - conserved hypothetical protein (TIGR), at 100,383 to 101,975 DVU0082 DVU0083: DVU0083 - conserved hypothetical protein (TIGR), at 102,105 to 102,524 DVU0083 DVU0084: DVU0084 - translation initiation factor, aIF-2BI family, putative (TIGR), at 102,596 to 103,648 DVU0084 Position (kb) 102 103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 101.174 kb on + strand, within DVU0082at 101.197 kb on - strand, within DVU0082at 101.201 kb on + strand, within DVU0082at 101.210 kb on + strand, within DVU0082at 101.220 kb on + strand, within DVU0082at 101.220 kb on + strand, within DVU0082at 101.234 kb on + strand, within DVU0082at 101.242 kb on - strand, within DVU0082at 101.325 kb on + strand, within DVU0082at 101.328 kb on - strand, within DVU0082at 101.338 kb on + strand, within DVU0082at 101.346 kb on - strand, within DVU0082at 101.346 kb on - strand, within DVU0082at 101.358 kb on + strand, within DVU0082at 101.386 kb on - strand, within DVU0082at 101.399 kb on + strand, within DVU0082at 101.407 kb on - strand, within DVU0082at 101.416 kb on - strand, within DVU0082at 101.427 kb on + strand, within DVU0082at 101.484 kb on - strand, within DVU0082at 101.488 kb on - strand, within DVU0082at 101.514 kb on + strand, within DVU0082at 101.590 kb on - strand, within DVU0082at 101.671 kb on + strand, within DVU0082at 101.682 kb on - strand, within DVU0082at 101.730 kb on - strand, within DVU0082at 101.731 kb on + strand, within DVU0082at 101.731 kb on + strand, within DVU0082at 101.731 kb on + strand, within DVU0082at 101.733 kb on + strand, within DVU0082at 101.739 kb on - strand, within DVU0082at 101.739 kb on - strand, within DVU0082at 101.751 kb on - strand, within DVU0082at 101.782 kb on + strand, within DVU0082at 101.841 kb on - strandat 101.853 kb on + strandat 101.861 kb on - strandat 101.875 kb on + strandat 101.900 kb on + strandat 101.908 kb on - strandat 101.952 kb on + strandat 101.957 kb on + strandat 101.979 kb on - strandat 102.027 kb on + strandat 102.044 kb on + strandat 102.140 kb on - strandat 102.140 kb on - strandat 102.157 kb on + strand, within DVU0083at 102.162 kb on + strand, within DVU0083at 102.165 kb on - strand, within DVU0083at 102.189 kb on + strand, within DVU0083at 102.202 kb on - strand, within DVU0083at 102.237 kb on + strand, within DVU0083at 102.247 kb on - strand, within DVU0083at 102.334 kb on - strand, within DVU0083at 102.355 kb on + strand, within DVU0083at 102.355 kb on + strand, within DVU0083at 102.355 kb on + strand, within DVU0083at 102.393 kb on - strand, within DVU0083at 102.433 kb on + strand, within DVU0083at 102.486 kb on + strandat 102.569 kb on - strandat 102.700 kb on + strandat 102.735 kb on + strand, within DVU0084at 102.758 kb on - strand, within DVU0084at 102.806 kb on + strand, within DVU0084at 102.948 kb on + strand, within DVU0084at 102.959 kb on - strand, within DVU0084at 102.961 kb on - strand, within DVU0084at 103.040 kb on + strand, within DVU0084at 103.068 kb on - strand, within DVU0084at 103.097 kb on + strand, within DVU0084at 103.117 kb on - strand, within DVU0084at 103.130 kb on + strand, within DVU0084at 103.135 kb on + strand, within DVU0084at 103.152 kb on + strand, within DVU0084at 103.152 kb on + strand, within DVU0084at 103.160 kb on - strand, within DVU0084at 103.160 kb on - strand, within DVU0084at 103.189 kb on - strand, within DVU0084at 103.210 kb on + strand, within DVU0084at 103.210 kb on + strand, within DVU0084at 103.213 kb on - strand, within DVU0084at 103.306 kb on + strand, within DVU0084at 103.319 kb on - strand, within DVU0084at 103.319 kb on - strand, within DVU0084at 103.333 kb on - strand, within DVU0084at 103.333 kb on - strand, within DVU0084at 103.353 kb on + strand, within DVU0084at 103.361 kb on - strand, within DVU0084at 103.363 kb on + strand, within DVU0084at 103.366 kb on - strand, within DVU0084at 103.371 kb on - strand, within DVU0084at 103.377 kb on + strand, within DVU0084at 103.417 kb on - strand, within DVU0084at 103.489 kb on + strand, within DVU0084at 103.515 kb on + strand, within DVU0084

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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101,174 + DVU0082 0.50 -1.4
101,197 - DVU0082 0.51 -0.4
101,201 + DVU0082 0.51 -1.2
101,210 + DVU0082 0.52 -2.5
101,220 + DVU0082 0.53 -1.4
101,220 + DVU0082 0.53 -0.2
101,234 + DVU0082 0.53 +0.3
101,242 - DVU0082 0.54 +0.3
101,325 + DVU0082 0.59 -2.1
101,328 - DVU0082 0.59 +0.1
101,338 + DVU0082 0.60 -0.3
101,346 - DVU0082 0.60 +0.7
101,346 - DVU0082 0.60 -1.5
101,358 + DVU0082 0.61 -0.4
101,386 - DVU0082 0.63 +0.6
101,399 + DVU0082 0.64 -0.5
101,407 - DVU0082 0.64 +2.1
101,416 - DVU0082 0.65 -1.7
101,427 + DVU0082 0.66 +1.7
101,484 - DVU0082 0.69 -1.1
101,488 - DVU0082 0.69 +0.1
101,514 + DVU0082 0.71 +0.1
101,590 - DVU0082 0.76 -1.3
101,671 + DVU0082 0.81 -0.4
101,682 - DVU0082 0.82 -0.2
101,730 - DVU0082 0.85 +2.7
101,731 + DVU0082 0.85 -0.2
101,731 + DVU0082 0.85 -1.0
101,731 + DVU0082 0.85 +1.4
101,733 + DVU0082 0.85 +2.1
101,739 - DVU0082 0.85 -0.7
101,739 - DVU0082 0.85 +2.9
101,751 - DVU0082 0.86 -1.2
101,782 + DVU0082 0.88 +0.2
101,841 - -0.7
101,853 + -0.4
101,861 - +0.7
101,875 + +0.4
101,900 + +0.2
101,908 - -0.9
101,952 + -0.4
101,957 + +1.1
101,979 - +0.2
102,027 + -1.9
102,044 + -1.8
102,140 - +0.8
102,140 - -0.9
102,157 + DVU0083 0.12 +0.5
102,162 + DVU0083 0.14 +0.2
102,165 - DVU0083 0.14 +0.3
102,189 + DVU0083 0.20 -0.4
102,202 - DVU0083 0.23 -0.4
102,237 + DVU0083 0.31 -0.1
102,247 - DVU0083 0.34 +0.5
102,334 - DVU0083 0.55 +1.6
102,355 + DVU0083 0.60 -1.6
102,355 + DVU0083 0.60 +0.1
102,355 + DVU0083 0.60 +0.9
102,393 - DVU0083 0.69 +1.5
102,433 + DVU0083 0.78 -0.1
102,486 + -0.3
102,569 - -1.2
102,700 + +0.6
102,735 + DVU0084 0.13 -0.2
102,758 - DVU0084 0.15 -0.1
102,806 + DVU0084 0.20 +3.7
102,948 + DVU0084 0.33 +0.4
102,959 - DVU0084 0.34 +0.4
102,961 - DVU0084 0.35 +0.1
103,040 + DVU0084 0.42 -0.6
103,068 - DVU0084 0.45 -0.4
103,097 + DVU0084 0.48 +0.3
103,117 - DVU0084 0.49 +0.0
103,130 + DVU0084 0.51 -1.6
103,135 + DVU0084 0.51 -0.3
103,152 + DVU0084 0.53 +0.5
103,152 + DVU0084 0.53 +2.5
103,160 - DVU0084 0.54 -0.1
103,160 - DVU0084 0.54 -0.3
103,189 - DVU0084 0.56 +0.3
103,210 + DVU0084 0.58 +0.6
103,210 + DVU0084 0.58 +0.0
103,213 - DVU0084 0.59 +0.2
103,306 + DVU0084 0.67 -0.4
103,319 - DVU0084 0.69 +0.7
103,319 - DVU0084 0.69 -1.1
103,333 - DVU0084 0.70 -0.4
103,333 - DVU0084 0.70 +0.9
103,353 + DVU0084 0.72 -0.5
103,361 - DVU0084 0.73 +1.8
103,363 + DVU0084 0.73 -0.5
103,366 - DVU0084 0.73 -1.0
103,371 - DVU0084 0.74 +0.5
103,377 + DVU0084 0.74 -0.5
103,417 - DVU0084 0.78 +0.4
103,489 + DVU0084 0.85 -1.2
103,515 + DVU0084 0.87 +1.3

Or see this region's nucleotide sequence