Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2855

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2854 and DVU2855 are separated by 122 nucleotidesDVU2855 and DVU2856 are separated by 8 nucleotides DVU2854: DVU2854 - tail protein, putative (TIGR), at 2,953,962 to 2,955,095 DVU2854 DVU2855: DVU2855 - tail/DNA circulation protein, putative (TIGR), at 2,955,218 to 2,956,417 DVU2855 DVU2856: DVU2856 - conserved domain protein (TIGR), at 2,956,426 to 2,957,916 DVU2856 Position (kb) 2955 2956 2957Strain fitness (log2 ratio) -2 -1 0 1 2at 2954.583 kb on + strand, within DVU2854at 2954.591 kb on - strand, within DVU2854at 2954.598 kb on - strand, within DVU2854at 2954.626 kb on - strand, within DVU2854at 2954.718 kb on + strand, within DVU2854at 2954.780 kb on - strand, within DVU2854at 2954.780 kb on - strand, within DVU2854at 2954.785 kb on - strand, within DVU2854at 2955.227 kb on + strandat 2955.284 kb on - strandat 2955.348 kb on - strand, within DVU2855at 2955.484 kb on - strand, within DVU2855at 2955.633 kb on + strand, within DVU2855at 2955.656 kb on - strand, within DVU2855at 2955.979 kb on + strand, within DVU2855at 2956.659 kb on + strand, within DVU2856at 2956.727 kb on - strand, within DVU2856at 2957.069 kb on + strand, within DVU2856at 2957.156 kb on + strand, within DVU2856at 2957.201 kb on - strand, within DVU2856at 2957.211 kb on - strand, within DVU2856at 2957.211 kb on - strand, within DVU2856at 2957.264 kb on + strand, within DVU2856at 2957.264 kb on + strand, within DVU2856at 2957.264 kb on + strand, within DVU2856at 2957.270 kb on + strand, within DVU2856at 2957.272 kb on - strand, within DVU2856at 2957.365 kb on + strand, within DVU2856at 2957.380 kb on - strand, within DVU2856at 2957.390 kb on + strand, within DVU2856at 2957.392 kb on + strand, within DVU2856

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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2,954,583 + DVU2854 0.55 +0.7
2,954,591 - DVU2854 0.55 -0.1
2,954,598 - DVU2854 0.56 -0.5
2,954,626 - DVU2854 0.59 +0.1
2,954,718 + DVU2854 0.67 -0.4
2,954,780 - DVU2854 0.72 +0.3
2,954,780 - DVU2854 0.72 -0.3
2,954,785 - DVU2854 0.73 +0.3
2,955,227 + +0.5
2,955,284 - +0.2
2,955,348 - DVU2855 0.11 +1.0
2,955,484 - DVU2855 0.22 +0.9
2,955,633 + DVU2855 0.35 +0.0
2,955,656 - DVU2855 0.36 +0.5
2,955,979 + DVU2855 0.63 +0.0
2,956,659 + DVU2856 0.16 -1.4
2,956,727 - DVU2856 0.20 -1.0
2,957,069 + DVU2856 0.43 -1.9
2,957,156 + DVU2856 0.49 -0.5
2,957,201 - DVU2856 0.52 -0.2
2,957,211 - DVU2856 0.53 -0.8
2,957,211 - DVU2856 0.53 +0.4
2,957,264 + DVU2856 0.56 +2.4
2,957,264 + DVU2856 0.56 -2.2
2,957,264 + DVU2856 0.56 +0.0
2,957,270 + DVU2856 0.57 +1.2
2,957,272 - DVU2856 0.57 +0.0
2,957,365 + DVU2856 0.63 -0.6
2,957,380 - DVU2856 0.64 -0.2
2,957,390 + DVU2856 0.65 +0.9
2,957,392 + DVU2856 0.65 -0.9

Or see this region's nucleotide sequence