Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2623

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2621 and DVU2622 are separated by 9 nucleotidesDVU2622 and DVU2623 are separated by 297 nucleotidesDVU2623 and DVU2624 are separated by 134 nucleotidesDVU2624 and DVU2625 are separated by 96 nucleotidesDVU2625 and DVU2626 overlap by 11 nucleotides DVU2621: DVU2621 - hypothetical protein (TIGR), at 2,741,758 to 2,742,570 DVU2621 DVU2622: DVU2622 - hypothetical protein (TIGR), at 2,742,580 to 2,742,768 DVU2622 DVU2623: DVU2623 - hypothetical protein (TIGR), at 2,743,066 to 2,743,413 DVU2623 DVU2624: DVU2624 - hypothetical protein (TIGR), at 2,743,548 to 2,744,045 DVU2624 DVU2625: DVU2625 - hypothetical protein (TIGR), at 2,744,142 to 2,744,243 DVU2625 DVU2626: DVU2626 - hypothetical protein (TIGR), at 2,744,233 to 2,744,439 DVU2626 Position (kb) 2743 2744Strain fitness (log2 ratio) -2 -1 0 1at 2742.073 kb on - strand, within DVU2621at 2742.203 kb on - strand, within DVU2621at 2742.348 kb on - strand, within DVU2621at 2742.375 kb on - strand, within DVU2621at 2742.397 kb on + strand, within DVU2621at 2742.452 kb on - strand, within DVU2621at 2742.454 kb on + strand, within DVU2621at 2742.464 kb on + strand, within DVU2621at 2742.467 kb on - strand, within DVU2621at 2742.467 kb on - strand, within DVU2621at 2742.477 kb on - strand, within DVU2621at 2742.508 kb on + strandat 2742.594 kb on + strandat 2742.775 kb on + strandat 2742.778 kb on - strandat 2742.778 kb on - strandat 2742.782 kb on + strandat 2742.782 kb on + strandat 2742.783 kb on - strandat 2742.790 kb on - strandat 2742.846 kb on - strandat 2742.855 kb on + strandat 2742.896 kb on + strandat 2742.904 kb on - strandat 2742.968 kb on - strandat 2742.987 kb on + strandat 2742.987 kb on + strandat 2743.023 kb on - strandat 2743.067 kb on + strandat 2743.075 kb on - strandat 2743.103 kb on + strand, within DVU2623at 2743.103 kb on + strand, within DVU2623at 2743.105 kb on + strand, within DVU2623at 2743.113 kb on - strand, within DVU2623at 2743.117 kb on + strand, within DVU2623at 2743.139 kb on + strand, within DVU2623at 2743.200 kb on - strand, within DVU2623at 2743.301 kb on - strand, within DVU2623at 2743.303 kb on - strand, within DVU2623at 2743.329 kb on + strand, within DVU2623at 2743.336 kb on + strand, within DVU2623at 2743.372 kb on - strand, within DVU2623at 2743.373 kb on + strand, within DVU2623at 2743.391 kb on - strandat 2743.430 kb on + strandat 2743.543 kb on + strandat 2743.551 kb on - strandat 2743.608 kb on + strand, within DVU2624at 2743.611 kb on - strand, within DVU2624at 2743.625 kb on + strand, within DVU2624at 2743.638 kb on - strand, within DVU2624at 2743.731 kb on - strand, within DVU2624at 2743.828 kb on - strand, within DVU2624at 2743.960 kb on + strand, within DVU2624at 2744.020 kb on + strandat 2744.291 kb on - strand, within DVU2626at 2744.328 kb on + strand, within DVU2626at 2744.329 kb on + strand, within DVU2626at 2744.329 kb on + strand, within DVU2626at 2744.347 kb on + strand, within DVU2626at 2744.356 kb on - strand, within DVU2626

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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2,742,073 - DVU2621 0.39 +0.4
2,742,203 - DVU2621 0.55 -1.3
2,742,348 - DVU2621 0.73 -1.6
2,742,375 - DVU2621 0.76 -1.5
2,742,397 + DVU2621 0.79 +0.1
2,742,452 - DVU2621 0.85 -0.6
2,742,454 + DVU2621 0.86 -1.1
2,742,464 + DVU2621 0.87 -1.6
2,742,467 - DVU2621 0.87 -0.3
2,742,467 - DVU2621 0.87 +0.9
2,742,477 - DVU2621 0.88 -0.5
2,742,508 + -1.1
2,742,594 + -0.9
2,742,775 + +0.1
2,742,778 - -1.6
2,742,778 - -0.4
2,742,782 + -1.5
2,742,782 + -2.7
2,742,783 - -0.2
2,742,790 - +1.5
2,742,846 - -0.3
2,742,855 + -0.4
2,742,896 + +0.6
2,742,904 - -0.9
2,742,968 - -0.4
2,742,987 + -0.4
2,742,987 + -1.0
2,743,023 - +0.7
2,743,067 + -1.4
2,743,075 - -2.3
2,743,103 + DVU2623 0.11 -1.4
2,743,103 + DVU2623 0.11 +1.6
2,743,105 + DVU2623 0.11 -0.1
2,743,113 - DVU2623 0.14 -1.1
2,743,117 + DVU2623 0.15 -1.5
2,743,139 + DVU2623 0.21 -1.8
2,743,200 - DVU2623 0.39 +0.4
2,743,301 - DVU2623 0.68 -1.6
2,743,303 - DVU2623 0.68 -0.6
2,743,329 + DVU2623 0.76 -0.7
2,743,336 + DVU2623 0.78 +1.1
2,743,372 - DVU2623 0.88 -1.2
2,743,373 + DVU2623 0.88 -1.9
2,743,391 - -1.9
2,743,430 + +0.2
2,743,543 + -0.4
2,743,551 - -1.4
2,743,608 + DVU2624 0.12 -0.5
2,743,611 - DVU2624 0.13 -0.3
2,743,625 + DVU2624 0.15 -1.0
2,743,638 - DVU2624 0.18 -0.5
2,743,731 - DVU2624 0.37 +0.1
2,743,828 - DVU2624 0.56 -1.5
2,743,960 + DVU2624 0.83 -1.7
2,744,020 + -1.2
2,744,291 - DVU2626 0.28 -0.7
2,744,328 + DVU2626 0.46 -1.0
2,744,329 + DVU2626 0.46 -1.1
2,744,329 + DVU2626 0.46 +0.3
2,744,347 + DVU2626 0.55 -0.0
2,744,356 - DVU2626 0.59 +0.1

Or see this region's nucleotide sequence