Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2576

Experiment: MoYLS4 with Zinc Sulfate 1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2575 and DVU2576 overlap by 4 nucleotidesDVU2576 and DVU2577 are separated by 94 nucleotidesDVU2577 and tRNA-Leu are separated by 131 nucleotides DVU2575: DVU2575 - peptidase, M20/M25/M40 family (TIGR), at 2,688,199 to 2,689,299 DVU2575 DVU2576: DVU2576 - oligopeptide ABC transporter, ATP-binding protein (TIGR), at 2,689,296 to 2,690,261 DVU2576 DVU2577: DVU2577 - DNA-binding response regulator, LuxR family (TIGR), at 2,690,356 to 2,691,006 DVU2577 DVU_tRNA-Leu-6: tRNA-Leu - tRNA with anticodon CAG for Leu (VIMSS-AUTO), at 2,691,138 to 2,691,224 tRNA-Leu Position (kb) 2689 2690 2691Strain fitness (log2 ratio) -2 -1 0 1 2at 2688.305 kb on - strandat 2688.374 kb on - strand, within DVU2575at 2688.394 kb on + strand, within DVU2575at 2688.402 kb on + strand, within DVU2575at 2688.402 kb on - strand, within DVU2575at 2688.444 kb on + strand, within DVU2575at 2688.452 kb on - strand, within DVU2575at 2688.452 kb on - strand, within DVU2575at 2688.506 kb on - strand, within DVU2575at 2688.526 kb on - strand, within DVU2575at 2688.569 kb on - strand, within DVU2575at 2688.745 kb on + strand, within DVU2575at 2688.745 kb on + strand, within DVU2575at 2688.767 kb on + strand, within DVU2575at 2688.839 kb on + strand, within DVU2575at 2688.852 kb on - strand, within DVU2575at 2688.873 kb on - strand, within DVU2575at 2688.892 kb on - strand, within DVU2575at 2688.928 kb on + strand, within DVU2575at 2688.965 kb on + strand, within DVU2575at 2688.968 kb on - strand, within DVU2575at 2689.049 kb on - strand, within DVU2575at 2689.087 kb on + strand, within DVU2575at 2689.087 kb on + strand, within DVU2575at 2689.089 kb on + strand, within DVU2575at 2689.095 kb on - strand, within DVU2575at 2689.117 kb on + strand, within DVU2575at 2689.185 kb on - strand, within DVU2575at 2689.191 kb on + strandat 2689.199 kb on - strandat 2689.219 kb on - strandat 2689.228 kb on + strandat 2689.251 kb on + strandat 2689.298 kb on + strandat 2689.299 kb on + strandat 2689.317 kb on + strandat 2689.335 kb on + strandat 2689.381 kb on + strandat 2689.406 kb on + strand, within DVU2576at 2689.406 kb on + strand, within DVU2576at 2689.407 kb on - strand, within DVU2576at 2689.439 kb on + strand, within DVU2576at 2689.439 kb on + strand, within DVU2576at 2689.441 kb on + strand, within DVU2576at 2689.447 kb on - strand, within DVU2576at 2689.449 kb on + strand, within DVU2576at 2689.460 kb on + strand, within DVU2576at 2689.516 kb on + strand, within DVU2576at 2689.524 kb on - strand, within DVU2576at 2689.568 kb on + strand, within DVU2576at 2689.571 kb on + strand, within DVU2576at 2689.593 kb on + strand, within DVU2576at 2689.593 kb on + strand, within DVU2576at 2689.693 kb on + strand, within DVU2576at 2689.701 kb on - strand, within DVU2576at 2689.701 kb on - strand, within DVU2576at 2689.701 kb on - strand, within DVU2576at 2689.723 kb on + strand, within DVU2576at 2689.802 kb on - strand, within DVU2576at 2689.810 kb on - strand, within DVU2576at 2689.821 kb on - strand, within DVU2576at 2689.831 kb on + strand, within DVU2576at 2689.841 kb on + strand, within DVU2576at 2689.848 kb on + strand, within DVU2576at 2689.923 kb on - strand, within DVU2576at 2690.006 kb on + strand, within DVU2576at 2690.006 kb on - strand, within DVU2576at 2690.042 kb on + strand, within DVU2576at 2690.050 kb on - strand, within DVU2576at 2690.065 kb on + strand, within DVU2576at 2690.145 kb on + strand, within DVU2576at 2690.310 kb on - strandat 2690.343 kb on - strandat 2690.358 kb on + strandat 2690.414 kb on - strandat 2690.418 kb on + strandat 2690.455 kb on + strand, within DVU2577at 2690.520 kb on + strand, within DVU2577at 2690.535 kb on - strand, within DVU2577at 2690.648 kb on + strand, within DVU2577at 2690.650 kb on - strand, within DVU2577at 2690.699 kb on - strand, within DVU2577at 2690.921 kb on - strand, within DVU2577at 2691.032 kb on + strandat 2691.244 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
remove
2,688,305 - -1.3
2,688,374 - DVU2575 0.16 -0.5
2,688,394 + DVU2575 0.18 +0.0
2,688,402 + DVU2575 0.18 +0.2
2,688,402 - DVU2575 0.18 +0.3
2,688,444 + DVU2575 0.22 +0.6
2,688,452 - DVU2575 0.23 +0.1
2,688,452 - DVU2575 0.23 +0.6
2,688,506 - DVU2575 0.28 -0.1
2,688,526 - DVU2575 0.30 -0.6
2,688,569 - DVU2575 0.34 +0.1
2,688,745 + DVU2575 0.50 -0.1
2,688,745 + DVU2575 0.50 -0.2
2,688,767 + DVU2575 0.52 +0.9
2,688,839 + DVU2575 0.58 +1.4
2,688,852 - DVU2575 0.59 -1.2
2,688,873 - DVU2575 0.61 +0.3
2,688,892 - DVU2575 0.63 -0.5
2,688,928 + DVU2575 0.66 +0.1
2,688,965 + DVU2575 0.70 -1.7
2,688,968 - DVU2575 0.70 -0.2
2,689,049 - DVU2575 0.77 -2.0
2,689,087 + DVU2575 0.81 -0.1
2,689,087 + DVU2575 0.81 -0.3
2,689,089 + DVU2575 0.81 +1.6
2,689,095 - DVU2575 0.81 -0.5
2,689,117 + DVU2575 0.83 +1.0
2,689,185 - DVU2575 0.90 +0.8
2,689,191 + -0.6
2,689,199 - +0.6
2,689,219 - -1.1
2,689,228 + -0.0
2,689,251 + +1.4
2,689,298 + -0.3
2,689,299 + -1.1
2,689,317 + +0.2
2,689,335 + -1.4
2,689,381 + +0.4
2,689,406 + DVU2576 0.11 -0.4
2,689,406 + DVU2576 0.11 -0.4
2,689,407 - DVU2576 0.11 +0.0
2,689,439 + DVU2576 0.15 +0.4
2,689,439 + DVU2576 0.15 +0.1
2,689,441 + DVU2576 0.15 -0.1
2,689,447 - DVU2576 0.16 +0.9
2,689,449 + DVU2576 0.16 -0.2
2,689,460 + DVU2576 0.17 +0.3
2,689,516 + DVU2576 0.23 -0.3
2,689,524 - DVU2576 0.24 -0.3
2,689,568 + DVU2576 0.28 +0.7
2,689,571 + DVU2576 0.28 +0.7
2,689,593 + DVU2576 0.31 -0.4
2,689,593 + DVU2576 0.31 +0.2
2,689,693 + DVU2576 0.41 +0.4
2,689,701 - DVU2576 0.42 -1.5
2,689,701 - DVU2576 0.42 -0.2
2,689,701 - DVU2576 0.42 -1.1
2,689,723 + DVU2576 0.44 -0.2
2,689,802 - DVU2576 0.52 +0.4
2,689,810 - DVU2576 0.53 +0.5
2,689,821 - DVU2576 0.54 -0.4
2,689,831 + DVU2576 0.55 +1.0
2,689,841 + DVU2576 0.56 +0.7
2,689,848 + DVU2576 0.57 +1.2
2,689,923 - DVU2576 0.65 +0.3
2,690,006 + DVU2576 0.73 -0.1
2,690,006 - DVU2576 0.73 -1.5
2,690,042 + DVU2576 0.77 +2.0
2,690,050 - DVU2576 0.78 +0.1
2,690,065 + DVU2576 0.80 -2.3
2,690,145 + DVU2576 0.88 +0.4
2,690,310 - +1.1
2,690,343 - +0.2
2,690,358 + -0.6
2,690,414 - -0.4
2,690,418 + +1.0
2,690,455 + DVU2577 0.15 +2.5
2,690,520 + DVU2577 0.25 +0.8
2,690,535 - DVU2577 0.27 +0.2
2,690,648 + DVU2577 0.45 +1.2
2,690,650 - DVU2577 0.45 -1.1
2,690,699 - DVU2577 0.53 -0.7
2,690,921 - DVU2577 0.87 +0.3
2,691,032 + +0.2
2,691,244 - +0.4

Or see this region's nucleotide sequence