Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2487

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2485 and DVU2486 are separated by 394 nucleotidesDVU2486 and DVU2487 are separated by 48 nucleotidesDVU2487 and DVU2489 are separated by 745 nucleotides DVU2485: DVU2485 - membrane protein, putative (TIGR), at 2,596,160 to 2,597,224 DVU2485 DVU2486: DVU2486 - acetyltransferase, GNAT family (TIGR), at 2,597,619 to 2,598,164 DVU2486 DVU2487: DVU2487 - hypothetical protein (TIGR), at 2,598,213 to 2,599,400 DVU2487 DVU2489: DVU2489 - hypothetical protein (TIGR), at 2,600,146 to 2,600,436 DVU2489 Position (kb) 2598 2599 2600Strain fitness (log2 ratio) -2 -1 0 1 2at 2597.343 kb on + strandat 2597.361 kb on - strandat 2597.389 kb on + strandat 2597.437 kb on + strandat 2597.437 kb on + strandat 2597.490 kb on + strandat 2597.546 kb on - strandat 2597.593 kb on - strandat 2597.616 kb on + strandat 2597.634 kb on + strandat 2597.677 kb on + strand, within DVU2486at 2597.758 kb on - strand, within DVU2486at 2597.777 kb on + strand, within DVU2486at 2597.779 kb on + strand, within DVU2486at 2597.787 kb on - strand, within DVU2486at 2597.787 kb on - strand, within DVU2486at 2597.787 kb on - strand, within DVU2486at 2597.792 kb on - strand, within DVU2486at 2597.890 kb on - strand, within DVU2486at 2597.968 kb on + strand, within DVU2486at 2597.984 kb on - strand, within DVU2486at 2598.005 kb on - strand, within DVU2486at 2598.052 kb on + strand, within DVU2486at 2598.060 kb on - strand, within DVU2486at 2598.079 kb on + strand, within DVU2486at 2598.087 kb on - strand, within DVU2486at 2598.173 kb on + strandat 2598.173 kb on + strandat 2598.193 kb on - strandat 2598.241 kb on - strandat 2598.241 kb on - strandat 2598.255 kb on + strandat 2598.263 kb on - strandat 2598.263 kb on - strandat 2598.263 kb on - strandat 2598.466 kb on + strand, within DVU2487at 2598.506 kb on + strand, within DVU2487at 2598.536 kb on + strand, within DVU2487at 2598.723 kb on + strand, within DVU2487at 2598.732 kb on - strand, within DVU2487at 2598.770 kb on + strand, within DVU2487at 2598.870 kb on + strand, within DVU2487at 2598.896 kb on + strand, within DVU2487at 2598.942 kb on + strand, within DVU2487at 2599.031 kb on - strand, within DVU2487at 2599.031 kb on - strand, within DVU2487at 2599.162 kb on + strand, within DVU2487at 2599.172 kb on + strand, within DVU2487at 2599.175 kb on - strand, within DVU2487at 2599.244 kb on + strand, within DVU2487at 2599.387 kb on - strandat 2599.507 kb on + strandat 2599.537 kb on - strandat 2599.568 kb on + strandat 2599.591 kb on + strandat 2599.610 kb on - strandat 2599.645 kb on + strandat 2599.751 kb on - strandat 2599.865 kb on - strandat 2599.951 kb on + strandat 2600.005 kb on - strandat 2600.037 kb on + strandat 2600.106 kb on + strandat 2600.142 kb on + strandat 2600.174 kb on - strandat 2600.188 kb on - strand, within DVU2489at 2600.223 kb on + strand, within DVU2489at 2600.223 kb on + strand, within DVU2489at 2600.242 kb on + strand, within DVU2489at 2600.275 kb on - strand, within DVU2489at 2600.277 kb on - strand, within DVU2489at 2600.337 kb on + strand, within DVU2489at 2600.337 kb on + strand, within DVU2489at 2600.353 kb on - strand, within DVU2489

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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2,597,343 + -0.7
2,597,361 - +0.5
2,597,389 + -0.1
2,597,437 + +1.5
2,597,437 + +0.6
2,597,490 + -0.8
2,597,546 - +1.4
2,597,593 - -0.4
2,597,616 + -0.4
2,597,634 + +1.4
2,597,677 + DVU2486 0.11 -0.5
2,597,758 - DVU2486 0.25 +0.1
2,597,777 + DVU2486 0.29 +0.6
2,597,779 + DVU2486 0.29 -1.8
2,597,787 - DVU2486 0.31 +0.6
2,597,787 - DVU2486 0.31 +0.6
2,597,787 - DVU2486 0.31 +0.8
2,597,792 - DVU2486 0.32 -0.0
2,597,890 - DVU2486 0.50 -0.1
2,597,968 + DVU2486 0.64 +0.6
2,597,984 - DVU2486 0.67 +2.6
2,598,005 - DVU2486 0.71 +0.4
2,598,052 + DVU2486 0.79 +0.4
2,598,060 - DVU2486 0.81 -0.9
2,598,079 + DVU2486 0.84 -0.1
2,598,087 - DVU2486 0.86 +1.0
2,598,173 + +0.2
2,598,173 + -1.3
2,598,193 - -0.8
2,598,241 - -0.5
2,598,241 - -0.3
2,598,255 + +0.3
2,598,263 - -0.1
2,598,263 - +0.8
2,598,263 - -0.2
2,598,466 + DVU2487 0.21 +0.1
2,598,506 + DVU2487 0.25 +0.1
2,598,536 + DVU2487 0.27 -0.0
2,598,723 + DVU2487 0.43 +0.4
2,598,732 - DVU2487 0.44 +1.0
2,598,770 + DVU2487 0.47 +0.3
2,598,870 + DVU2487 0.55 +1.6
2,598,896 + DVU2487 0.57 -1.3
2,598,942 + DVU2487 0.61 -1.6
2,599,031 - DVU2487 0.69 +0.6
2,599,031 - DVU2487 0.69 +0.2
2,599,162 + DVU2487 0.80 -0.7
2,599,172 + DVU2487 0.81 +0.5
2,599,175 - DVU2487 0.81 +0.7
2,599,244 + DVU2487 0.87 -0.2
2,599,387 - -0.5
2,599,507 + -0.1
2,599,537 - +0.4
2,599,568 + -0.3
2,599,591 + +0.3
2,599,610 - -0.7
2,599,645 + +0.2
2,599,751 - +0.3
2,599,865 - -1.0
2,599,951 + +0.2
2,600,005 - -0.9
2,600,037 + -0.6
2,600,106 + +0.2
2,600,142 + -0.3
2,600,174 - -0.6
2,600,188 - DVU2489 0.14 -0.4
2,600,223 + DVU2489 0.26 +0.4
2,600,223 + DVU2489 0.26 -0.0
2,600,242 + DVU2489 0.33 +0.6
2,600,275 - DVU2489 0.44 -0.4
2,600,277 - DVU2489 0.45 -0.8
2,600,337 + DVU2489 0.66 -0.8
2,600,337 + DVU2489 0.66 -0.1
2,600,353 - DVU2489 0.71 -0.6

Or see this region's nucleotide sequence