Experiment: MoYLS4 with Zinc Sulfate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2324 and merP are separated by 272 nucleotides merP and DVU2326 are separated by 96 nucleotides DVU2326 and DORF17147 overlap by 1 nucleotides DORF17147 and hypA are separated by 273 nucleotides
DVU2324: DVU2324 - copper-translocating P-type ATPase (TIGR), at 2,419,638 to 2,422,355
DVU2324
DVU2325: merP - mercuric transport protein periplasmic component (TIGR), at 2,422,628 to 2,422,825
merP
DVU2326: DVU2326 - conserved domain protein (TIGR), at 2,422,922 to 2,423,824
DVU2326
DORF17147: DORF17147 - SEED: TPR domain protein, at 2,423,824 to 2,424,540
DORF17147
DVU2328: hypA - hydrogenase nickel insertion protein HypA, putative (TIGR), at 2,424,814 to 2,425,167
hypA
Position (kb)
2422
2423
2424 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2421.960 kb on + strand, within DVU2324 at 2421.963 kb on - strand, within DVU2324 at 2421.967 kb on + strand, within DVU2324 at 2421.968 kb on - strand, within DVU2324 at 2421.968 kb on - strand, within DVU2324 at 2422.019 kb on + strand, within DVU2324 at 2422.204 kb on + strand at 2422.204 kb on + strand at 2422.204 kb on + strand at 2422.204 kb on + strand at 2422.212 kb on - strand at 2422.254 kb on - strand at 2422.392 kb on + strand at 2422.400 kb on - strand at 2422.423 kb on + strand at 2422.423 kb on + strand at 2422.423 kb on + strand at 2422.423 kb on + strand at 2422.423 kb on + strand at 2422.423 kb on + strand at 2422.423 kb on + strand at 2422.423 kb on + strand at 2422.423 kb on + strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.431 kb on - strand at 2422.480 kb on + strand at 2422.483 kb on - strand at 2422.488 kb on - strand at 2422.752 kb on - strand, within merP at 2422.808 kb on + strand at 2422.816 kb on - strand at 2422.914 kb on + strand at 2423.022 kb on - strand, within DVU2326 at 2423.045 kb on - strand, within DVU2326 at 2423.133 kb on + strand, within DVU2326 at 2423.141 kb on - strand, within DVU2326 at 2423.141 kb on - strand, within DVU2326 at 2423.157 kb on + strand, within DVU2326 at 2423.247 kb on + strand, within DVU2326 at 2423.334 kb on - strand, within DVU2326 at 2423.385 kb on + strand, within DVU2326 at 2423.387 kb on + strand, within DVU2326 at 2423.388 kb on - strand, within DVU2326 at 2423.393 kb on - strand, within DVU2326 at 2423.422 kb on + strand, within DVU2326 at 2423.435 kb on + strand, within DVU2326 at 2423.512 kb on + strand, within DVU2326 at 2423.544 kb on - strand, within DVU2326 at 2423.569 kb on - strand, within DVU2326 at 2423.783 kb on + strand at 2423.791 kb on - strand at 2423.960 kb on - strand, within DORF17147 at 2424.014 kb on + strand, within DORF17147 at 2424.080 kb on + strand, within DORF17147 at 2424.145 kb on + strand, within DORF17147 at 2424.320 kb on - strand, within DORF17147 at 2424.389 kb on + strand, within DORF17147 at 2424.402 kb on - strand, within DORF17147 at 2424.411 kb on + strand, within DORF17147 at 2424.437 kb on + strand, within DORF17147 at 2424.449 kb on + strand, within DORF17147 at 2424.464 kb on + strand, within DORF17147 at 2424.464 kb on + strand, within DORF17147 at 2424.473 kb on + strand at 2424.511 kb on - strand at 2424.558 kb on + strand at 2424.566 kb on + strand at 2424.612 kb on + strand at 2424.620 kb on - strand at 2424.720 kb on + strand at 2424.748 kb on + strand at 2424.785 kb on + strand at 2424.817 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM remove 2,421,960 + DVU2324 0.85 -0.4 2,421,963 - DVU2324 0.86 -0.1 2,421,967 + DVU2324 0.86 +0.2 2,421,968 - DVU2324 0.86 -0.5 2,421,968 - DVU2324 0.86 -0.7 2,422,019 + DVU2324 0.88 +1.1 2,422,204 + -0.1 2,422,204 + +0.2 2,422,204 + -0.2 2,422,204 + -0.5 2,422,212 - -0.6 2,422,254 - -1.8 2,422,392 + -0.0 2,422,400 - +1.3 2,422,423 + -0.6 2,422,423 + -0.8 2,422,423 + +0.6 2,422,423 + -0.4 2,422,423 + +0.1 2,422,423 + +0.0 2,422,423 + +0.4 2,422,423 + -1.8 2,422,423 + +0.2 2,422,431 - -0.1 2,422,431 - -0.3 2,422,431 - +1.2 2,422,431 - -0.4 2,422,431 - -1.1 2,422,431 - -0.3 2,422,431 - -0.3 2,422,431 - -0.0 2,422,431 - -0.2 2,422,431 - +0.5 2,422,431 - -0.7 2,422,431 - -0.0 2,422,431 - +0.1 2,422,431 - -0.3 2,422,431 - -0.6 2,422,431 - -0.7 2,422,480 + +0.1 2,422,483 - -0.3 2,422,488 - -0.8 2,422,752 - merP DVU2325 0.63 +0.2 2,422,808 + -0.5 2,422,816 - -0.7 2,422,914 + -0.8 2,423,022 - DVU2326 0.11 -0.6 2,423,045 - DVU2326 0.14 +0.7 2,423,133 + DVU2326 0.23 -0.5 2,423,141 - DVU2326 0.24 -0.7 2,423,141 - DVU2326 0.24 -0.6 2,423,157 + DVU2326 0.26 -1.2 2,423,247 + DVU2326 0.36 -0.2 2,423,334 - DVU2326 0.46 -0.1 2,423,385 + DVU2326 0.51 -0.4 2,423,387 + DVU2326 0.51 +0.1 2,423,388 - DVU2326 0.52 -0.5 2,423,393 - DVU2326 0.52 -1.0 2,423,422 + DVU2326 0.55 +0.9 2,423,435 + DVU2326 0.57 -0.0 2,423,512 + DVU2326 0.65 -0.8 2,423,544 - DVU2326 0.69 -0.3 2,423,569 - DVU2326 0.72 +0.4 2,423,783 + +0.3 2,423,791 - -0.6 2,423,960 - DORF17147 0.19 +1.9 2,424,014 + DORF17147 0.26 -1.2 2,424,080 + DORF17147 0.36 +0.4 2,424,145 + DORF17147 0.45 +0.1 2,424,320 - DORF17147 0.69 -0.6 2,424,389 + DORF17147 0.79 +0.1 2,424,402 - DORF17147 0.81 +1.2 2,424,411 + DORF17147 0.82 -1.0 2,424,437 + DORF17147 0.85 -0.2 2,424,449 + DORF17147 0.87 +0.4 2,424,464 + DORF17147 0.89 -0.9 2,424,464 + DORF17147 0.89 +1.6 2,424,473 + -1.9 2,424,511 - -0.1 2,424,558 + -0.4 2,424,566 + +0.5 2,424,612 + -1.3 2,424,620 - -0.6 2,424,720 + -0.3 2,424,748 + -1.4 2,424,785 + +0.0 2,424,817 + +0.2
Or see this region's nucleotide sequence