Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2318

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2317 and rbr2 are separated by 611 nucleotidesrbr2 and DVU2319 are separated by 176 nucleotidesDVU2319 and DVU2320 are separated by 25 nucleotides DVU2317: DVU2317 - methyl-accepting chemotaxis protein, putative (TIGR), at 2,411,334 to 2,413,103 DVU2317 DVU2318: rbr2 - rubrerythrin, putative (TIGR), at 2,413,715 to 2,414,209 rbr2 DVU2319: DVU2319 - transcriptional regulator domain protein (TIGR), at 2,414,386 to 2,414,991 DVU2319 DVU2320: DVU2320 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein (TIGR), at 2,415,017 to 2,416,855 DVU2320 Position (kb) 2413 2414 2415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2412.916 kb on - strand, within DVU2317at 2412.916 kb on - strand, within DVU2317at 2412.939 kb on - strandat 2412.978 kb on - strandat 2413.020 kb on - strandat 2413.031 kb on + strandat 2413.088 kb on - strandat 2413.176 kb on - strandat 2413.192 kb on + strandat 2413.203 kb on + strandat 2413.203 kb on + strandat 2413.211 kb on - strandat 2413.211 kb on - strandat 2413.211 kb on - strandat 2413.244 kb on - strandat 2413.325 kb on + strandat 2413.350 kb on - strandat 2413.415 kb on + strandat 2413.538 kb on + strandat 2413.553 kb on + strandat 2413.597 kb on - strandat 2413.611 kb on - strandat 2413.759 kb on + strandat 2413.767 kb on - strand, within rbr2at 2413.767 kb on - strand, within rbr2at 2413.837 kb on - strand, within rbr2at 2414.037 kb on - strand, within rbr2at 2414.037 kb on - strand, within rbr2at 2414.037 kb on - strand, within rbr2at 2414.104 kb on + strand, within rbr2at 2414.129 kb on + strand, within rbr2at 2414.183 kb on - strandat 2414.236 kb on - strandat 2414.362 kb on - strandat 2414.362 kb on - strandat 2414.381 kb on + strandat 2414.440 kb on + strandat 2414.455 kb on - strand, within DVU2319at 2414.514 kb on + strand, within DVU2319at 2414.514 kb on + strand, within DVU2319at 2414.622 kb on + strand, within DVU2319at 2414.713 kb on + strand, within DVU2319at 2414.908 kb on + strand, within DVU2319

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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2,412,916 - DVU2317 0.89 -2.0
2,412,916 - DVU2317 0.89 -0.4
2,412,939 - -0.3
2,412,978 - -0.5
2,413,020 - -0.3
2,413,031 + -1.0
2,413,088 - +1.9
2,413,176 - +0.2
2,413,192 + -0.0
2,413,203 + +0.5
2,413,203 + -1.1
2,413,211 - -1.1
2,413,211 - -1.0
2,413,211 - +0.6
2,413,244 - +0.0
2,413,325 + -0.7
2,413,350 - -3.0
2,413,415 + -1.1
2,413,538 + -0.8
2,413,553 + +0.7
2,413,597 - -2.1
2,413,611 - -1.2
2,413,759 + -0.2
2,413,767 - rbr2 DVU2318 0.11 +2.1
2,413,767 - rbr2 DVU2318 0.11 +0.1
2,413,837 - rbr2 DVU2318 0.25 -0.1
2,414,037 - rbr2 DVU2318 0.65 -0.8
2,414,037 - rbr2 DVU2318 0.65 -0.4
2,414,037 - rbr2 DVU2318 0.65 -0.0
2,414,104 + rbr2 DVU2318 0.79 -1.3
2,414,129 + rbr2 DVU2318 0.84 +0.0
2,414,183 - +0.6
2,414,236 - -0.7
2,414,362 - -0.1
2,414,362 - +0.0
2,414,381 + +1.5
2,414,440 + -0.5
2,414,455 - DVU2319 0.11 -0.4
2,414,514 + DVU2319 0.21 -1.1
2,414,514 + DVU2319 0.21 +0.1
2,414,622 + DVU2319 0.39 +0.6
2,414,713 + DVU2319 0.54 -0.2
2,414,908 + DVU2319 0.86 +0.2

Or see this region's nucleotide sequence