Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1974

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1972 and DVU1973 overlap by 2 nucleotidesDVU1973 and DVU1974 overlap by 8 nucleotidesDVU1974 and DVU1975 are separated by 71 nucleotides DVU1972: DVU1972 - hypothetical protein (TIGR), at 2,046,806 to 2,047,000 DVU1972 DVU1973: DVU1973 - rhodanese-like domain protein (TIGR), at 2,046,999 to 2,047,847 DVU1973 DVU1974: DVU1974 - pyridine nucleotide-disulfide oxidoreductase (TIGR), at 2,047,840 to 2,048,943 DVU1974 DVU1975: DVU1975 - methyl-accepting chemotaxis protein (TIGR), at 2,049,015 to 2,050,763 DVU1975 Position (kb) 2047 2048 2049Strain fitness (log2 ratio) -1 0 1at 2046.872 kb on + strand, within DVU1972at 2046.880 kb on - strand, within DVU1972at 2046.926 kb on + strand, within DVU1972at 2046.985 kb on + strandat 2046.993 kb on - strandat 2047.154 kb on - strand, within DVU1973at 2047.187 kb on - strand, within DVU1973at 2047.214 kb on - strand, within DVU1973at 2047.403 kb on - strand, within DVU1973at 2047.429 kb on + strand, within DVU1973at 2047.451 kb on - strand, within DVU1973at 2047.460 kb on - strand, within DVU1973at 2047.592 kb on - strand, within DVU1973at 2047.619 kb on + strand, within DVU1973at 2047.620 kb on - strand, within DVU1973at 2047.663 kb on - strand, within DVU1973at 2047.698 kb on + strand, within DVU1973at 2047.707 kb on - strand, within DVU1973at 2047.748 kb on - strand, within DVU1973at 2047.891 kb on - strandat 2047.894 kb on + strandat 2047.945 kb on + strandat 2047.960 kb on - strand, within DVU1974at 2047.995 kb on + strand, within DVU1974at 2048.356 kb on + strand, within DVU1974at 2048.395 kb on - strand, within DVU1974at 2048.518 kb on + strand, within DVU1974at 2048.615 kb on - strand, within DVU1974at 2048.632 kb on + strand, within DVU1974at 2048.642 kb on + strand, within DVU1974at 2048.645 kb on - strand, within DVU1974at 2048.647 kb on - strand, within DVU1974at 2048.766 kb on + strand, within DVU1974at 2048.774 kb on - strand, within DVU1974at 2048.845 kb on + strandat 2048.903 kb on + strandat 2048.999 kb on - strandat 2049.021 kb on - strandat 2049.053 kb on - strandat 2049.072 kb on + strandat 2049.080 kb on - strandat 2049.105 kb on - strandat 2049.228 kb on - strand, within DVU1975at 2049.323 kb on - strand, within DVU1975at 2049.331 kb on + strand, within DVU1975at 2049.465 kb on - strand, within DVU1975at 2049.733 kb on - strand, within DVU1975at 2049.842 kb on + strand, within DVU1975at 2049.879 kb on - strand, within DVU1975

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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2,046,872 + DVU1972 0.34 -1.5
2,046,880 - DVU1972 0.38 -1.0
2,046,926 + DVU1972 0.62 +0.3
2,046,985 + -0.4
2,046,993 - -0.4
2,047,154 - DVU1973 0.18 -0.3
2,047,187 - DVU1973 0.22 -0.4
2,047,214 - DVU1973 0.25 -0.6
2,047,403 - DVU1973 0.48 +0.1
2,047,429 + DVU1973 0.51 -0.7
2,047,451 - DVU1973 0.53 -0.8
2,047,460 - DVU1973 0.54 -0.8
2,047,592 - DVU1973 0.70 +1.1
2,047,619 + DVU1973 0.73 +0.8
2,047,620 - DVU1973 0.73 +0.1
2,047,663 - DVU1973 0.78 -0.2
2,047,698 + DVU1973 0.82 +1.0
2,047,707 - DVU1973 0.83 -0.4
2,047,748 - DVU1973 0.88 -0.5
2,047,891 - -0.0
2,047,894 + -1.3
2,047,945 + -0.8
2,047,960 - DVU1974 0.11 -0.0
2,047,995 + DVU1974 0.14 -1.0
2,048,356 + DVU1974 0.47 +1.4
2,048,395 - DVU1974 0.50 +0.1
2,048,518 + DVU1974 0.61 +0.3
2,048,615 - DVU1974 0.70 -0.8
2,048,632 + DVU1974 0.72 +0.4
2,048,642 + DVU1974 0.73 +0.2
2,048,645 - DVU1974 0.73 +0.7
2,048,647 - DVU1974 0.73 -0.2
2,048,766 + DVU1974 0.84 +0.8
2,048,774 - DVU1974 0.85 +1.6
2,048,845 + -0.2
2,048,903 + -0.0
2,048,999 - -0.3
2,049,021 - -0.5
2,049,053 - -0.1
2,049,072 + +0.2
2,049,080 - -0.1
2,049,105 - -1.2
2,049,228 - DVU1975 0.12 +0.0
2,049,323 - DVU1975 0.18 -0.2
2,049,331 + DVU1975 0.18 -0.8
2,049,465 - DVU1975 0.26 -0.1
2,049,733 - DVU1975 0.41 -0.6
2,049,842 + DVU1975 0.47 +0.3
2,049,879 - DVU1975 0.49 -1.0

Or see this region's nucleotide sequence