Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1894

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1893 and DVU1894 are separated by 210 nucleotidesDVU1894 and DVU1895 are separated by 231 nucleotides DVU1893: DVU1893 - ATP-dependent protease, putative (TIGR), at 1,965,307 to 1,967,727 DVU1893 DVU1894: DVU1894 - hypothetical protein (TIGR), at 1,967,938 to 1,968,132 DVU1894 DVU1895: DVU1895 - major facilitator superfamily protein (TIGR), at 1,968,364 to 1,969,530 DVU1895 Position (kb) 1967 1968 1969Strain fitness (log2 ratio) -1 0 1at 1967.034 kb on - strand, within DVU1893at 1967.180 kb on - strand, within DVU1893at 1967.212 kb on - strand, within DVU1893at 1967.314 kb on + strand, within DVU1893at 1967.319 kb on + strand, within DVU1893at 1967.399 kb on - strand, within DVU1893at 1967.490 kb on + strandat 1967.498 kb on - strandat 1967.539 kb on + strandat 1967.593 kb on - strandat 1967.593 kb on - strandat 1967.765 kb on - strandat 1967.991 kb on + strand, within DVU1894at 1968.011 kb on - strand, within DVU1894at 1968.043 kb on + strand, within DVU1894at 1968.084 kb on + strand, within DVU1894at 1968.156 kb on + strandat 1968.156 kb on + strandat 1968.156 kb on + strandat 1968.164 kb on - strandat 1968.164 kb on - strandat 1968.216 kb on + strandat 1968.224 kb on - strandat 1968.229 kb on + strandat 1968.242 kb on - strandat 1968.258 kb on + strandat 1968.270 kb on + strandat 1968.270 kb on + strandat 1968.333 kb on - strandat 1968.363 kb on - strandat 1968.390 kb on - strandat 1968.493 kb on - strand, within DVU1895at 1968.606 kb on - strand, within DVU1895at 1968.720 kb on + strand, within DVU1895at 1968.790 kb on + strand, within DVU1895at 1968.903 kb on - strand, within DVU1895

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,967,034 - DVU1893 0.71 +0.7
1,967,180 - DVU1893 0.77 +0.1
1,967,212 - DVU1893 0.79 +0.1
1,967,314 + DVU1893 0.83 -0.7
1,967,319 + DVU1893 0.83 +0.7
1,967,399 - DVU1893 0.86 -0.1
1,967,490 + +0.4
1,967,498 - +0.5
1,967,539 + +0.2
1,967,593 - -1.2
1,967,593 - +0.6
1,967,765 - -0.6
1,967,991 + DVU1894 0.27 +0.1
1,968,011 - DVU1894 0.37 +0.2
1,968,043 + DVU1894 0.54 +0.2
1,968,084 + DVU1894 0.75 +0.2
1,968,156 + -0.7
1,968,156 + +0.1
1,968,156 + -1.0
1,968,164 - -1.3
1,968,164 - -1.2
1,968,216 + +0.5
1,968,224 - +0.2
1,968,229 + -0.6
1,968,242 - -1.0
1,968,258 + -1.6
1,968,270 + +1.2
1,968,270 + -0.4
1,968,333 - +1.1
1,968,363 - -0.9
1,968,390 - +0.1
1,968,493 - DVU1895 0.11 -0.4
1,968,606 - DVU1895 0.21 -1.6
1,968,720 + DVU1895 0.31 -1.4
1,968,790 + DVU1895 0.37 -0.0
1,968,903 - DVU1895 0.46 -1.0

Or see this region's nucleotide sequence