Experiment: MoYLS4 with Zinc Sulfate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1854 and ssrA are separated by 128 nucleotides ssrA and DVU1855 are separated by 174 nucleotides DVU1855 and DVU1857 are separated by 358 nucleotides
DVU1854: DVU1854 - hypothetical protein (TIGR), at 1,921,449 to 1,922,141
DVU1854
DvtmRNA1: ssrA - tmRNA (transfer messenger RNA, or 10Sa RNA) (VIMSS-AUTO), at 1,922,270 to 1,922,621
ssrA
DVU1855: DVU1855 - integrase, truncation (TIGR), at 1,922,796 to 1,923,116
DVU1855
DVU1857: DVU1857 - methyl-accepting chemotaxis protein (TIGR), at 1,923,475 to 1,925,562
DVU1857
Position (kb)
1922
1923
1924 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1921.825 kb on - strand, within DVU1854 at 1921.831 kb on + strand, within DVU1854 at 1921.907 kb on + strand, within DVU1854 at 1921.907 kb on + strand, within DVU1854 at 1921.915 kb on - strand, within DVU1854 at 1921.915 kb on - strand, within DVU1854 at 1921.976 kb on - strand, within DVU1854 at 1922.152 kb on - strand at 1922.181 kb on - strand at 1922.201 kb on - strand at 1922.201 kb on - strand at 1922.266 kb on + strand at 1922.626 kb on - strand at 1922.719 kb on + strand at 1922.788 kb on + strand at 1922.844 kb on - strand, within DVU1855 at 1922.863 kb on + strand, within DVU1855 at 1922.896 kb on - strand, within DVU1855 at 1922.974 kb on + strand, within DVU1855 at 1922.984 kb on + strand, within DVU1855 at 1923.059 kb on + strand, within DVU1855 at 1923.215 kb on - strand at 1923.220 kb on + strand at 1923.225 kb on + strand at 1923.249 kb on + strand at 1923.249 kb on + strand at 1923.268 kb on + strand at 1923.300 kb on + strand at 1923.577 kb on - strand at 1923.670 kb on + strand at 1923.678 kb on + strand at 1923.685 kb on - strand, within DVU1857 at 1923.688 kb on + strand, within DVU1857 at 1923.697 kb on - strand, within DVU1857 at 1923.795 kb on - strand, within DVU1857 at 1923.806 kb on - strand, within DVU1857 at 1923.807 kb on + strand, within DVU1857 at 1923.807 kb on + strand, within DVU1857 at 1924.009 kb on - strand, within DVU1857 at 1924.108 kb on - strand, within DVU1857
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM remove 1,921,825 - DVU1854 0.54 -0.5 1,921,831 + DVU1854 0.55 -0.8 1,921,907 + DVU1854 0.66 +3.2 1,921,907 + DVU1854 0.66 -0.3 1,921,915 - DVU1854 0.67 +1.0 1,921,915 - DVU1854 0.67 -0.5 1,921,976 - DVU1854 0.76 +0.2 1,922,152 - +0.1 1,922,181 - -1.0 1,922,201 - +0.4 1,922,201 - +0.4 1,922,266 + +1.1 1,922,626 - -0.5 1,922,719 + +1.2 1,922,788 + -0.3 1,922,844 - DVU1855 0.15 +1.3 1,922,863 + DVU1855 0.21 -1.8 1,922,896 - DVU1855 0.31 +0.2 1,922,974 + DVU1855 0.55 +0.5 1,922,984 + DVU1855 0.59 +0.4 1,923,059 + DVU1855 0.82 +1.3 1,923,215 - -1.0 1,923,220 + -1.8 1,923,225 + +0.3 1,923,249 + -0.1 1,923,249 + -1.2 1,923,268 + -1.6 1,923,300 + -1.7 1,923,577 - +0.4 1,923,670 + -0.3 1,923,678 + -1.1 1,923,685 - DVU1857 0.10 -0.6 1,923,688 + DVU1857 0.10 +0.2 1,923,697 - DVU1857 0.11 -0.6 1,923,795 - DVU1857 0.15 +0.6 1,923,806 - DVU1857 0.16 -0.3 1,923,807 + DVU1857 0.16 -1.1 1,923,807 + DVU1857 0.16 +0.7 1,924,009 - DVU1857 0.26 +0.0 1,924,108 - DVU1857 0.30 +1.3
Or see this region's nucleotide sequence