Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1855

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1854 and ssrA are separated by 128 nucleotidesssrA and DVU1855 are separated by 174 nucleotidesDVU1855 and DVU1857 are separated by 358 nucleotides DVU1854: DVU1854 - hypothetical protein (TIGR), at 1,921,449 to 1,922,141 DVU1854 DvtmRNA1: ssrA - tmRNA (transfer messenger RNA, or 10Sa RNA) (VIMSS-AUTO), at 1,922,270 to 1,922,621 ssrA DVU1855: DVU1855 - integrase, truncation (TIGR), at 1,922,796 to 1,923,116 DVU1855 DVU1857: DVU1857 - methyl-accepting chemotaxis protein (TIGR), at 1,923,475 to 1,925,562 DVU1857 Position (kb) 1922 1923 1924Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1921.825 kb on - strand, within DVU1854at 1921.831 kb on + strand, within DVU1854at 1921.907 kb on + strand, within DVU1854at 1921.907 kb on + strand, within DVU1854at 1921.915 kb on - strand, within DVU1854at 1921.915 kb on - strand, within DVU1854at 1921.976 kb on - strand, within DVU1854at 1922.152 kb on - strandat 1922.181 kb on - strandat 1922.201 kb on - strandat 1922.201 kb on - strandat 1922.266 kb on + strandat 1922.626 kb on - strandat 1922.719 kb on + strandat 1922.788 kb on + strandat 1922.844 kb on - strand, within DVU1855at 1922.863 kb on + strand, within DVU1855at 1922.896 kb on - strand, within DVU1855at 1922.974 kb on + strand, within DVU1855at 1922.984 kb on + strand, within DVU1855at 1923.059 kb on + strand, within DVU1855at 1923.215 kb on - strandat 1923.220 kb on + strandat 1923.225 kb on + strandat 1923.249 kb on + strandat 1923.249 kb on + strandat 1923.268 kb on + strandat 1923.300 kb on + strandat 1923.577 kb on - strandat 1923.670 kb on + strandat 1923.678 kb on + strandat 1923.685 kb on - strand, within DVU1857at 1923.688 kb on + strand, within DVU1857at 1923.697 kb on - strand, within DVU1857at 1923.795 kb on - strand, within DVU1857at 1923.806 kb on - strand, within DVU1857at 1923.807 kb on + strand, within DVU1857at 1923.807 kb on + strand, within DVU1857at 1924.009 kb on - strand, within DVU1857at 1924.108 kb on - strand, within DVU1857

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,921,825 - DVU1854 0.54 -0.5
1,921,831 + DVU1854 0.55 -0.8
1,921,907 + DVU1854 0.66 +3.2
1,921,907 + DVU1854 0.66 -0.3
1,921,915 - DVU1854 0.67 +1.0
1,921,915 - DVU1854 0.67 -0.5
1,921,976 - DVU1854 0.76 +0.2
1,922,152 - +0.1
1,922,181 - -1.0
1,922,201 - +0.4
1,922,201 - +0.4
1,922,266 + +1.1
1,922,626 - -0.5
1,922,719 + +1.2
1,922,788 + -0.3
1,922,844 - DVU1855 0.15 +1.3
1,922,863 + DVU1855 0.21 -1.8
1,922,896 - DVU1855 0.31 +0.2
1,922,974 + DVU1855 0.55 +0.5
1,922,984 + DVU1855 0.59 +0.4
1,923,059 + DVU1855 0.82 +1.3
1,923,215 - -1.0
1,923,220 + -1.8
1,923,225 + +0.3
1,923,249 + -0.1
1,923,249 + -1.2
1,923,268 + -1.6
1,923,300 + -1.7
1,923,577 - +0.4
1,923,670 + -0.3
1,923,678 + -1.1
1,923,685 - DVU1857 0.10 -0.6
1,923,688 + DVU1857 0.10 +0.2
1,923,697 - DVU1857 0.11 -0.6
1,923,795 - DVU1857 0.15 +0.6
1,923,806 - DVU1857 0.16 -0.3
1,923,807 + DVU1857 0.16 -1.1
1,923,807 + DVU1857 0.16 +0.7
1,924,009 - DVU1857 0.26 +0.0
1,924,108 - DVU1857 0.30 +1.3

Or see this region's nucleotide sequence