Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1810

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnadB and DVU1810 are separated by 110 nucleotidesDVU1810 and DVU1811 are separated by 17 nucleotidesDVU1811 and coxB are separated by 43 nucleotides DVU1809: nadB - L-aspartate oxidase (TIGR), at 1,873,643 to 1,875,229 nadB DVU1810: DVU1810 - hypothetical protein (TIGR), at 1,875,340 to 1,875,762 DVU1810 DVU1811: DVU1811 - protoheme IX farnesyltransferase, putative (TIGR), at 1,875,780 to 1,876,643 DVU1811 DVU1812: coxB - cytochrome c oxidase, subunit II, putative (TIGR), at 1,876,687 to 1,877,967 coxB Position (kb) 1875 1876Strain fitness (log2 ratio) -1 0 1 2at 1875.300 kb on + strandat 1875.404 kb on + strand, within DVU1810at 1875.608 kb on - strand, within DVU1810at 1875.711 kb on + strand, within DVU1810at 1875.720 kb on + strandat 1875.724 kb on - strandat 1875.786 kb on - strandat 1875.921 kb on - strand, within DVU1811at 1875.931 kb on - strand, within DVU1811at 1876.042 kb on + strand, within DVU1811at 1876.147 kb on - strand, within DVU1811at 1876.149 kb on - strand, within DVU1811at 1876.149 kb on - strand, within DVU1811at 1876.278 kb on + strand, within DVU1811at 1876.343 kb on - strand, within DVU1811at 1876.371 kb on + strand, within DVU1811at 1876.418 kb on - strand, within DVU1811at 1876.419 kb on + strand, within DVU1811at 1876.427 kb on - strand, within DVU1811at 1876.491 kb on + strand, within DVU1811at 1876.628 kb on - strandat 1876.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,875,300 + -0.1
1,875,404 + DVU1810 0.15 -0.6
1,875,608 - DVU1810 0.63 +0.8
1,875,711 + DVU1810 0.88 +1.7
1,875,720 + -1.5
1,875,724 - -0.8
1,875,786 - -0.7
1,875,921 - DVU1811 0.16 -0.2
1,875,931 - DVU1811 0.17 -0.7
1,876,042 + DVU1811 0.30 +0.2
1,876,147 - DVU1811 0.42 -0.7
1,876,149 - DVU1811 0.43 +0.3
1,876,149 - DVU1811 0.43 +0.5
1,876,278 + DVU1811 0.58 +2.2
1,876,343 - DVU1811 0.65 -0.7
1,876,371 + DVU1811 0.68 -0.6
1,876,418 - DVU1811 0.74 -1.4
1,876,419 + DVU1811 0.74 -0.9
1,876,427 - DVU1811 0.75 +0.4
1,876,491 + DVU1811 0.82 -0.5
1,876,628 - -0.2
1,876,630 + +0.5

Or see this region's nucleotide sequence