Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1758

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1757 and DVU1758 are separated by 345 nucleotidesDVU1758 and mopB are separated by 164 nucleotides DVU1757: DVU1757 - site-specific recombinase, phage integrase family (TIGR), at 1,821,607 to 1,822,728 DVU1757 DVU1758: DVU1758 - lipoprotein, putative (TIGR), at 1,823,074 to 1,823,781 DVU1758 DVU1759: mopB - molybdenum-binding protein, HTH domain (TIGR), at 1,823,946 to 1,824,314 mopB Position (kb) 1823 1824Strain fitness (log2 ratio) -2 -1 0 1 2at 1822.126 kb on + strand, within DVU1757at 1822.126 kb on + strand, within DVU1757at 1822.187 kb on + strand, within DVU1757at 1822.267 kb on - strand, within DVU1757at 1822.330 kb on - strand, within DVU1757at 1822.355 kb on + strand, within DVU1757at 1822.363 kb on - strand, within DVU1757at 1822.364 kb on - strand, within DVU1757at 1822.381 kb on + strand, within DVU1757at 1822.520 kb on + strand, within DVU1757at 1822.537 kb on - strand, within DVU1757at 1822.544 kb on + strand, within DVU1757at 1823.036 kb on - strandat 1823.051 kb on + strandat 1823.101 kb on - strandat 1823.119 kb on - strandat 1823.119 kb on - strandat 1823.126 kb on - strandat 1823.254 kb on + strand, within DVU1758at 1823.262 kb on - strand, within DVU1758at 1823.365 kb on + strand, within DVU1758at 1823.373 kb on - strand, within DVU1758at 1823.436 kb on - strand, within DVU1758at 1823.496 kb on - strand, within DVU1758at 1823.501 kb on - strand, within DVU1758at 1823.580 kb on + strand, within DVU1758at 1823.620 kb on - strand, within DVU1758at 1823.759 kb on - strandat 1823.847 kb on + strandat 1823.847 kb on + strandat 1823.855 kb on - strandat 1823.855 kb on - strandat 1823.879 kb on - strandat 1823.894 kb on - strandat 1823.894 kb on - strandat 1823.953 kb on + strandat 1823.953 kb on + strandat 1823.961 kb on - strandat 1823.972 kb on + strandat 1824.107 kb on - strand, within mopBat 1824.107 kb on - strand, within mopBat 1824.153 kb on + strand, within mopBat 1824.269 kb on + strand, within mopBat 1824.277 kb on - strand, within mopBat 1824.284 kb on + strandat 1824.301 kb on + strandat 1824.507 kb on + strandat 1824.533 kb on + strandat 1824.538 kb on + strandat 1824.584 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,822,126 + DVU1757 0.46 +0.1
1,822,126 + DVU1757 0.46 -1.6
1,822,187 + DVU1757 0.52 +1.2
1,822,267 - DVU1757 0.59 +0.6
1,822,330 - DVU1757 0.64 -0.6
1,822,355 + DVU1757 0.67 -0.4
1,822,363 - DVU1757 0.67 -0.3
1,822,364 - DVU1757 0.67 -0.4
1,822,381 + DVU1757 0.69 -0.4
1,822,520 + DVU1757 0.81 +0.8
1,822,537 - DVU1757 0.83 -1.3
1,822,544 + DVU1757 0.84 -0.1
1,823,036 - -2.1
1,823,051 + -0.6
1,823,101 - -0.8
1,823,119 - -1.6
1,823,119 - -1.2
1,823,126 - -0.2
1,823,254 + DVU1758 0.25 +2.3
1,823,262 - DVU1758 0.27 -1.3
1,823,365 + DVU1758 0.41 -0.8
1,823,373 - DVU1758 0.42 +0.0
1,823,436 - DVU1758 0.51 +0.6
1,823,496 - DVU1758 0.60 -0.1
1,823,501 - DVU1758 0.60 +0.0
1,823,580 + DVU1758 0.71 +0.0
1,823,620 - DVU1758 0.77 -0.6
1,823,759 - -0.3
1,823,847 + -0.4
1,823,847 + -0.8
1,823,855 - +1.9
1,823,855 - +0.2
1,823,879 - -0.7
1,823,894 - +0.2
1,823,894 - -0.9
1,823,953 + -0.3
1,823,953 + -0.9
1,823,961 - +0.0
1,823,972 + +0.9
1,824,107 - mopB DVU1759 0.44 -0.5
1,824,107 - mopB DVU1759 0.44 -0.3
1,824,153 + mopB DVU1759 0.56 -0.4
1,824,269 + mopB DVU1759 0.88 -0.0
1,824,277 - mopB DVU1759 0.90 -0.3
1,824,284 + -0.2
1,824,301 + -0.0
1,824,507 + -0.9
1,824,533 + -0.2
1,824,538 + -0.3
1,824,584 + -0.1

Or see this region's nucleotide sequence