Experiment: MoYLS4 with Zinc Sulfate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1757 and DVU1758 are separated by 345 nucleotides DVU1758 and mopB are separated by 164 nucleotides
DVU1757: DVU1757 - site-specific recombinase, phage integrase family (TIGR), at 1,821,607 to 1,822,728
DVU1757
DVU1758: DVU1758 - lipoprotein, putative (TIGR), at 1,823,074 to 1,823,781
DVU1758
DVU1759: mopB - molybdenum-binding protein, HTH domain (TIGR), at 1,823,946 to 1,824,314
mopB
Position (kb)
1823
1824 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1822.126 kb on + strand, within DVU1757 at 1822.126 kb on + strand, within DVU1757 at 1822.187 kb on + strand, within DVU1757 at 1822.267 kb on - strand, within DVU1757 at 1822.330 kb on - strand, within DVU1757 at 1822.355 kb on + strand, within DVU1757 at 1822.363 kb on - strand, within DVU1757 at 1822.364 kb on - strand, within DVU1757 at 1822.381 kb on + strand, within DVU1757 at 1822.520 kb on + strand, within DVU1757 at 1822.537 kb on - strand, within DVU1757 at 1822.544 kb on + strand, within DVU1757 at 1823.036 kb on - strand at 1823.051 kb on + strand at 1823.101 kb on - strand at 1823.119 kb on - strand at 1823.119 kb on - strand at 1823.126 kb on - strand at 1823.254 kb on + strand, within DVU1758 at 1823.262 kb on - strand, within DVU1758 at 1823.365 kb on + strand, within DVU1758 at 1823.373 kb on - strand, within DVU1758 at 1823.436 kb on - strand, within DVU1758 at 1823.496 kb on - strand, within DVU1758 at 1823.501 kb on - strand, within DVU1758 at 1823.580 kb on + strand, within DVU1758 at 1823.620 kb on - strand, within DVU1758 at 1823.759 kb on - strand at 1823.847 kb on + strand at 1823.847 kb on + strand at 1823.855 kb on - strand at 1823.855 kb on - strand at 1823.879 kb on - strand at 1823.894 kb on - strand at 1823.894 kb on - strand at 1823.953 kb on + strand at 1823.953 kb on + strand at 1823.961 kb on - strand at 1823.972 kb on + strand at 1824.107 kb on - strand, within mopB at 1824.107 kb on - strand, within mopB at 1824.153 kb on + strand, within mopB at 1824.269 kb on + strand, within mopB at 1824.277 kb on - strand, within mopB at 1824.284 kb on + strand at 1824.301 kb on + strand at 1824.507 kb on + strand at 1824.533 kb on + strand at 1824.538 kb on + strand at 1824.584 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM remove 1,822,126 + DVU1757 0.46 +0.1 1,822,126 + DVU1757 0.46 -1.6 1,822,187 + DVU1757 0.52 +1.2 1,822,267 - DVU1757 0.59 +0.6 1,822,330 - DVU1757 0.64 -0.6 1,822,355 + DVU1757 0.67 -0.4 1,822,363 - DVU1757 0.67 -0.3 1,822,364 - DVU1757 0.67 -0.4 1,822,381 + DVU1757 0.69 -0.4 1,822,520 + DVU1757 0.81 +0.8 1,822,537 - DVU1757 0.83 -1.3 1,822,544 + DVU1757 0.84 -0.1 1,823,036 - -2.1 1,823,051 + -0.6 1,823,101 - -0.8 1,823,119 - -1.6 1,823,119 - -1.2 1,823,126 - -0.2 1,823,254 + DVU1758 0.25 +2.3 1,823,262 - DVU1758 0.27 -1.3 1,823,365 + DVU1758 0.41 -0.8 1,823,373 - DVU1758 0.42 +0.0 1,823,436 - DVU1758 0.51 +0.6 1,823,496 - DVU1758 0.60 -0.1 1,823,501 - DVU1758 0.60 +0.0 1,823,580 + DVU1758 0.71 +0.0 1,823,620 - DVU1758 0.77 -0.6 1,823,759 - -0.3 1,823,847 + -0.4 1,823,847 + -0.8 1,823,855 - +1.9 1,823,855 - +0.2 1,823,879 - -0.7 1,823,894 - +0.2 1,823,894 - -0.9 1,823,953 + -0.3 1,823,953 + -0.9 1,823,961 - +0.0 1,823,972 + +0.9 1,824,107 - mopB DVU1759 0.44 -0.5 1,824,107 - mopB DVU1759 0.44 -0.3 1,824,153 + mopB DVU1759 0.56 -0.4 1,824,269 + mopB DVU1759 0.88 -0.0 1,824,277 - mopB DVU1759 0.90 -0.3 1,824,284 + -0.2 1,824,301 + -0.0 1,824,507 + -0.9 1,824,533 + -0.2 1,824,538 + -0.3 1,824,584 + -0.1
Or see this region's nucleotide sequence