Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1756

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1754 and DVU1756 are separated by 633 nucleotidesDVU1756 and DVU1757 overlap by 29 nucleotides DVU1754: DVU1754 - hypothetical protein (TIGR), at 1,820,331 to 1,820,738 DVU1754 DVU1756: DVU1756 - hypothetical protein (TIGR), at 1,821,372 to 1,821,635 DVU1756 DVU1757: DVU1757 - site-specific recombinase, phage integrase family (TIGR), at 1,821,607 to 1,822,728 DVU1757 Position (kb) 1821 1822Strain fitness (log2 ratio) -1 0 1 2at 1820.382 kb on - strand, within DVU1754at 1820.394 kb on - strand, within DVU1754at 1820.427 kb on - strand, within DVU1754at 1820.478 kb on - strand, within DVU1754at 1820.699 kb on + strandat 1820.706 kb on + strandat 1820.707 kb on - strandat 1820.714 kb on - strandat 1820.714 kb on - strandat 1820.740 kb on - strandat 1820.759 kb on + strandat 1820.767 kb on - strandat 1820.767 kb on - strandat 1820.767 kb on - strandat 1820.771 kb on + strandat 1820.784 kb on + strandat 1820.803 kb on + strandat 1820.803 kb on + strandat 1820.866 kb on + strandat 1820.928 kb on - strandat 1821.009 kb on + strandat 1821.076 kb on - strandat 1821.182 kb on - strandat 1821.205 kb on + strandat 1821.221 kb on - strandat 1821.260 kb on + strandat 1821.283 kb on - strandat 1821.290 kb on - strandat 1821.306 kb on - strandat 1821.449 kb on + strand, within DVU1756at 1821.452 kb on - strand, within DVU1756at 1821.487 kb on - strand, within DVU1756at 1821.493 kb on - strand, within DVU1756at 1821.493 kb on - strand, within DVU1756at 1821.503 kb on + strand, within DVU1756at 1821.511 kb on - strand, within DVU1756at 1821.569 kb on - strand, within DVU1756at 1821.574 kb on - strand, within DVU1756at 1821.814 kb on - strand, within DVU1757at 1821.851 kb on - strand, within DVU1757at 1821.957 kb on + strand, within DVU1757at 1822.031 kb on + strand, within DVU1757at 1822.126 kb on + strand, within DVU1757at 1822.126 kb on + strand, within DVU1757at 1822.187 kb on + strand, within DVU1757at 1822.267 kb on - strand, within DVU1757at 1822.330 kb on - strand, within DVU1757at 1822.355 kb on + strand, within DVU1757at 1822.363 kb on - strand, within DVU1757at 1822.364 kb on - strand, within DVU1757at 1822.381 kb on + strand, within DVU1757at 1822.520 kb on + strand, within DVU1757at 1822.537 kb on - strand, within DVU1757at 1822.544 kb on + strand, within DVU1757

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,820,382 - DVU1754 0.12 -0.1
1,820,394 - DVU1754 0.15 -0.7
1,820,427 - DVU1754 0.24 +1.8
1,820,478 - DVU1754 0.36 -1.2
1,820,699 + +0.3
1,820,706 + +1.0
1,820,707 - +0.1
1,820,714 - -0.8
1,820,714 - -0.1
1,820,740 - +0.4
1,820,759 + -0.5
1,820,767 - +0.3
1,820,767 - -0.0
1,820,767 - -0.5
1,820,771 + -0.4
1,820,784 + -0.9
1,820,803 + +0.6
1,820,803 + +0.6
1,820,866 + +0.4
1,820,928 - -1.5
1,821,009 + -0.6
1,821,076 - -0.1
1,821,182 - +0.3
1,821,205 + +0.2
1,821,221 - +0.1
1,821,260 + -0.5
1,821,283 - +0.5
1,821,290 - -1.1
1,821,306 - +0.2
1,821,449 + DVU1756 0.29 +1.1
1,821,452 - DVU1756 0.30 +0.7
1,821,487 - DVU1756 0.44 -0.2
1,821,493 - DVU1756 0.46 -0.2
1,821,493 - DVU1756 0.46 +0.2
1,821,503 + DVU1756 0.50 -0.2
1,821,511 - DVU1756 0.53 -1.1
1,821,569 - DVU1756 0.75 +1.9
1,821,574 - DVU1756 0.77 +0.7
1,821,814 - DVU1757 0.18 +0.0
1,821,851 - DVU1757 0.22 -1.3
1,821,957 + DVU1757 0.31 -0.7
1,822,031 + DVU1757 0.38 -1.4
1,822,126 + DVU1757 0.46 +0.1
1,822,126 + DVU1757 0.46 -1.6
1,822,187 + DVU1757 0.52 +1.2
1,822,267 - DVU1757 0.59 +0.6
1,822,330 - DVU1757 0.64 -0.6
1,822,355 + DVU1757 0.67 -0.4
1,822,363 - DVU1757 0.67 -0.3
1,822,364 - DVU1757 0.67 -0.4
1,822,381 + DVU1757 0.69 -0.4
1,822,520 + DVU1757 0.81 +0.8
1,822,537 - DVU1757 0.83 -1.3
1,822,544 + DVU1757 0.84 -0.1

Or see this region's nucleotide sequence