Experiment: MoYLS4 with Zinc Sulfate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1754 and DVU1756 are separated by 633 nucleotides DVU1756 and DVU1757 overlap by 29 nucleotides
DVU1754: DVU1754 - hypothetical protein (TIGR), at 1,820,331 to 1,820,738
DVU1754
DVU1756: DVU1756 - hypothetical protein (TIGR), at 1,821,372 to 1,821,635
DVU1756
DVU1757: DVU1757 - site-specific recombinase, phage integrase family (TIGR), at 1,821,607 to 1,822,728
DVU1757
Position (kb)
1821
1822 Strain fitness (log2 ratio)
-1
0
1
2 at 1820.382 kb on - strand, within DVU1754 at 1820.394 kb on - strand, within DVU1754 at 1820.427 kb on - strand, within DVU1754 at 1820.478 kb on - strand, within DVU1754 at 1820.699 kb on + strand at 1820.706 kb on + strand at 1820.707 kb on - strand at 1820.714 kb on - strand at 1820.714 kb on - strand at 1820.740 kb on - strand at 1820.759 kb on + strand at 1820.767 kb on - strand at 1820.767 kb on - strand at 1820.767 kb on - strand at 1820.771 kb on + strand at 1820.784 kb on + strand at 1820.803 kb on + strand at 1820.803 kb on + strand at 1820.866 kb on + strand at 1820.928 kb on - strand at 1821.009 kb on + strand at 1821.076 kb on - strand at 1821.182 kb on - strand at 1821.205 kb on + strand at 1821.221 kb on - strand at 1821.260 kb on + strand at 1821.283 kb on - strand at 1821.290 kb on - strand at 1821.306 kb on - strand at 1821.449 kb on + strand, within DVU1756 at 1821.452 kb on - strand, within DVU1756 at 1821.487 kb on - strand, within DVU1756 at 1821.493 kb on - strand, within DVU1756 at 1821.493 kb on - strand, within DVU1756 at 1821.503 kb on + strand, within DVU1756 at 1821.511 kb on - strand, within DVU1756 at 1821.569 kb on - strand, within DVU1756 at 1821.574 kb on - strand, within DVU1756 at 1821.814 kb on - strand, within DVU1757 at 1821.851 kb on - strand, within DVU1757 at 1821.957 kb on + strand, within DVU1757 at 1822.031 kb on + strand, within DVU1757 at 1822.126 kb on + strand, within DVU1757 at 1822.126 kb on + strand, within DVU1757 at 1822.187 kb on + strand, within DVU1757 at 1822.267 kb on - strand, within DVU1757 at 1822.330 kb on - strand, within DVU1757 at 1822.355 kb on + strand, within DVU1757 at 1822.363 kb on - strand, within DVU1757 at 1822.364 kb on - strand, within DVU1757 at 1822.381 kb on + strand, within DVU1757 at 1822.520 kb on + strand, within DVU1757 at 1822.537 kb on - strand, within DVU1757 at 1822.544 kb on + strand, within DVU1757
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM remove 1,820,382 - DVU1754 0.12 -0.1 1,820,394 - DVU1754 0.15 -0.7 1,820,427 - DVU1754 0.24 +1.8 1,820,478 - DVU1754 0.36 -1.2 1,820,699 + +0.3 1,820,706 + +1.0 1,820,707 - +0.1 1,820,714 - -0.8 1,820,714 - -0.1 1,820,740 - +0.4 1,820,759 + -0.5 1,820,767 - +0.3 1,820,767 - -0.0 1,820,767 - -0.5 1,820,771 + -0.4 1,820,784 + -0.9 1,820,803 + +0.6 1,820,803 + +0.6 1,820,866 + +0.4 1,820,928 - -1.5 1,821,009 + -0.6 1,821,076 - -0.1 1,821,182 - +0.3 1,821,205 + +0.2 1,821,221 - +0.1 1,821,260 + -0.5 1,821,283 - +0.5 1,821,290 - -1.1 1,821,306 - +0.2 1,821,449 + DVU1756 0.29 +1.1 1,821,452 - DVU1756 0.30 +0.7 1,821,487 - DVU1756 0.44 -0.2 1,821,493 - DVU1756 0.46 -0.2 1,821,493 - DVU1756 0.46 +0.2 1,821,503 + DVU1756 0.50 -0.2 1,821,511 - DVU1756 0.53 -1.1 1,821,569 - DVU1756 0.75 +1.9 1,821,574 - DVU1756 0.77 +0.7 1,821,814 - DVU1757 0.18 +0.0 1,821,851 - DVU1757 0.22 -1.3 1,821,957 + DVU1757 0.31 -0.7 1,822,031 + DVU1757 0.38 -1.4 1,822,126 + DVU1757 0.46 +0.1 1,822,126 + DVU1757 0.46 -1.6 1,822,187 + DVU1757 0.52 +1.2 1,822,267 - DVU1757 0.59 +0.6 1,822,330 - DVU1757 0.64 -0.6 1,822,355 + DVU1757 0.67 -0.4 1,822,363 - DVU1757 0.67 -0.3 1,822,364 - DVU1757 0.67 -0.4 1,822,381 + DVU1757 0.69 -0.4 1,822,520 + DVU1757 0.81 +0.8 1,822,537 - DVU1757 0.83 -1.3 1,822,544 + DVU1757 0.84 -0.1
Or see this region's nucleotide sequence