Experiment: MoYLS4 with Zinc Sulfate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcvT and DVU1685 are separated by 51 nucleotides DVU1685 and DVU1686 overlap by 4 nucleotides DVU1686 and DVU1687 overlap by 4 nucleotides DVU1687 and DVU1688 overlap by 4 nucleotides
DVU1684: gcvT - glycine cleavage system T protein (TIGR), at 1,762,935 to 1,764,065
gcvT
DVU1685: DVU1685 - conserved hypothetical protein TIGR00046 (TIGR), at 1,764,117 to 1,764,866
DVU1685
DVU1686: DVU1686 - ATPase, AAA family (TIGR), at 1,764,863 to 1,766,098
DVU1686
DVU1687: DVU1687 - glycosyl transferase, group 2 family protein (TIGR), at 1,766,095 to 1,766,802
DVU1687
DVU1688: DVU1688 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (TIGR), at 1,766,799 to 1,767,608
DVU1688
Position (kb)
1764
1765
1766
1767 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1764.015 kb on + strand at 1764.124 kb on + strand at 1764.255 kb on + strand, within DVU1685 at 1764.331 kb on - strand, within DVU1685 at 1764.470 kb on + strand, within DVU1685 at 1764.547 kb on - strand, within DVU1685 at 1764.580 kb on - strand, within DVU1685 at 1764.809 kb on + strand at 1764.905 kb on - strand at 1764.961 kb on - strand at 1765.028 kb on - strand, within DVU1686 at 1765.088 kb on + strand, within DVU1686 at 1765.275 kb on + strand, within DVU1686 at 1765.275 kb on + strand, within DVU1686 at 1765.281 kb on - strand, within DVU1686 at 1765.283 kb on - strand, within DVU1686 at 1765.332 kb on - strand, within DVU1686 at 1765.332 kb on - strand, within DVU1686 at 1765.332 kb on - strand, within DVU1686 at 1765.345 kb on - strand, within DVU1686 at 1765.476 kb on + strand, within DVU1686 at 1765.591 kb on - strand, within DVU1686 at 1765.707 kb on + strand, within DVU1686 at 1765.746 kb on + strand, within DVU1686 at 1765.922 kb on + strand, within DVU1686 at 1765.922 kb on + strand, within DVU1686 at 1765.922 kb on + strand, within DVU1686 at 1765.922 kb on + strand, within DVU1686 at 1765.922 kb on + strand, within DVU1686 at 1765.929 kb on + strand, within DVU1686 at 1765.930 kb on - strand, within DVU1686 at 1765.930 kb on - strand, within DVU1686 at 1766.037 kb on - strand at 1766.099 kb on + strand at 1766.109 kb on + strand at 1766.140 kb on - strand at 1766.160 kb on - strand at 1766.259 kb on + strand, within DVU1687 at 1766.267 kb on - strand, within DVU1687 at 1766.337 kb on + strand, within DVU1687 at 1766.505 kb on + strand, within DVU1687 at 1766.513 kb on - strand, within DVU1687 at 1766.520 kb on - strand, within DVU1687 at 1766.539 kb on - strand, within DVU1687 at 1766.671 kb on + strand, within DVU1687 at 1766.679 kb on - strand, within DVU1687
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM remove 1,764,015 + +0.1 1,764,124 + -0.2 1,764,255 + DVU1685 0.18 -0.2 1,764,331 - DVU1685 0.29 -0.9 1,764,470 + DVU1685 0.47 +0.1 1,764,547 - DVU1685 0.57 -0.3 1,764,580 - DVU1685 0.62 -0.8 1,764,809 + +0.2 1,764,905 - -0.6 1,764,961 - -0.5 1,765,028 - DVU1686 0.13 -1.3 1,765,088 + DVU1686 0.18 -0.4 1,765,275 + DVU1686 0.33 +0.6 1,765,275 + DVU1686 0.33 -1.5 1,765,281 - DVU1686 0.34 +0.2 1,765,283 - DVU1686 0.34 -1.7 1,765,332 - DVU1686 0.38 -0.2 1,765,332 - DVU1686 0.38 -1.0 1,765,332 - DVU1686 0.38 -0.7 1,765,345 - DVU1686 0.39 -0.6 1,765,476 + DVU1686 0.50 -0.2 1,765,591 - DVU1686 0.59 -1.6 1,765,707 + DVU1686 0.68 +0.6 1,765,746 + DVU1686 0.71 +0.3 1,765,922 + DVU1686 0.86 -1.6 1,765,922 + DVU1686 0.86 +1.2 1,765,922 + DVU1686 0.86 +1.9 1,765,922 + DVU1686 0.86 -0.8 1,765,922 + DVU1686 0.86 +0.8 1,765,929 + DVU1686 0.86 -0.4 1,765,930 - DVU1686 0.86 +1.9 1,765,930 - DVU1686 0.86 +2.3 1,766,037 - +1.9 1,766,099 + -2.7 1,766,109 + +0.5 1,766,140 - -0.5 1,766,160 - +1.0 1,766,259 + DVU1687 0.23 -0.2 1,766,267 - DVU1687 0.24 -0.4 1,766,337 + DVU1687 0.34 -0.2 1,766,505 + DVU1687 0.58 -0.5 1,766,513 - DVU1687 0.59 -0.1 1,766,520 - DVU1687 0.60 -0.8 1,766,539 - DVU1687 0.63 +0.5 1,766,671 + DVU1687 0.81 -1.0 1,766,679 - DVU1687 0.82 -0.4
Or see this region's nucleotide sequence