Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1614

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1613 and DVU1614 are separated by 13 nucleotidesDVU1614 and paaK-2 are separated by 411 nucleotides DVU1613: DVU1613 - pyridine nucleotide-disulfide oxidoreductase (TIGR), at 1,698,737 to 1,699,795 DVU1613 DVU1614: DVU1614 - iron-sulfur cluster-binding protein (TIGR), at 1,699,809 to 1,700,339 DVU1614 DVU1615: paaK-2 - phenylacetate-coenzyme A ligase (TIGR), at 1,700,751 to 1,702,058 paaK-2 Position (kb) 1699 1700 1701Strain fitness (log2 ratio) -1 0 1 2at 1698.913 kb on - strand, within DVU1613at 1699.015 kb on + strand, within DVU1613at 1699.023 kb on - strand, within DVU1613at 1699.058 kb on - strand, within DVU1613at 1699.095 kb on - strand, within DVU1613at 1699.096 kb on + strand, within DVU1613at 1699.104 kb on - strand, within DVU1613at 1699.258 kb on + strand, within DVU1613at 1699.278 kb on - strand, within DVU1613at 1699.290 kb on - strand, within DVU1613at 1699.316 kb on - strand, within DVU1613at 1699.333 kb on + strand, within DVU1613at 1699.341 kb on - strand, within DVU1613at 1699.341 kb on - strand, within DVU1613at 1699.393 kb on - strand, within DVU1613at 1699.413 kb on + strand, within DVU1613at 1699.463 kb on + strand, within DVU1613at 1699.624 kb on - strand, within DVU1613at 1699.829 kb on + strandat 1699.829 kb on + strandat 1699.829 kb on + strandat 1699.853 kb on + strandat 1699.950 kb on - strand, within DVU1614at 1699.950 kb on - strand, within DVU1614at 1699.995 kb on - strand, within DVU1614at 1699.995 kb on - strand, within DVU1614at 1700.048 kb on - strand, within DVU1614at 1700.116 kb on + strand, within DVU1614at 1700.121 kb on + strand, within DVU1614at 1700.188 kb on + strand, within DVU1614at 1700.222 kb on - strand, within DVU1614at 1700.311 kb on - strandat 1700.336 kb on - strandat 1700.424 kb on - strandat 1700.616 kb on - strandat 1700.755 kb on + strandat 1700.810 kb on - strandat 1700.812 kb on + strandat 1700.919 kb on + strand, within paaK-2at 1701.006 kb on - strand, within paaK-2at 1701.104 kb on - strand, within paaK-2at 1701.112 kb on - strand, within paaK-2at 1701.123 kb on + strand, within paaK-2at 1701.131 kb on - strand, within paaK-2at 1701.254 kb on - strand, within paaK-2at 1701.308 kb on - strand, within paaK-2

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,698,913 - DVU1613 0.17 -0.8
1,699,015 + DVU1613 0.26 +0.5
1,699,023 - DVU1613 0.27 -1.3
1,699,058 - DVU1613 0.30 -1.1
1,699,095 - DVU1613 0.34 +0.8
1,699,096 + DVU1613 0.34 +0.5
1,699,104 - DVU1613 0.35 -0.6
1,699,258 + DVU1613 0.49 +0.2
1,699,278 - DVU1613 0.51 -1.7
1,699,290 - DVU1613 0.52 +0.7
1,699,316 - DVU1613 0.55 +1.0
1,699,333 + DVU1613 0.56 +0.1
1,699,341 - DVU1613 0.57 -0.1
1,699,341 - DVU1613 0.57 +0.7
1,699,393 - DVU1613 0.62 -0.2
1,699,413 + DVU1613 0.64 -1.4
1,699,463 + DVU1613 0.69 +1.5
1,699,624 - DVU1613 0.84 +0.2
1,699,829 + -0.1
1,699,829 + +1.0
1,699,829 + -0.1
1,699,853 + +0.9
1,699,950 - DVU1614 0.27 +1.5
1,699,950 - DVU1614 0.27 +1.1
1,699,995 - DVU1614 0.35 -0.6
1,699,995 - DVU1614 0.35 -1.2
1,700,048 - DVU1614 0.45 +1.8
1,700,116 + DVU1614 0.58 +1.0
1,700,121 + DVU1614 0.59 +0.5
1,700,188 + DVU1614 0.71 +0.2
1,700,222 - DVU1614 0.78 +0.5
1,700,311 - -1.3
1,700,336 - -0.4
1,700,424 - -0.6
1,700,616 - +0.1
1,700,755 + -0.4
1,700,810 - +0.4
1,700,812 + -0.6
1,700,919 + paaK-2 DVU1615 0.13 +0.3
1,701,006 - paaK-2 DVU1615 0.19 +0.2
1,701,104 - paaK-2 DVU1615 0.27 +2.3
1,701,112 - paaK-2 DVU1615 0.28 +0.3
1,701,123 + paaK-2 DVU1615 0.28 -1.0
1,701,131 - paaK-2 DVU1615 0.29 +0.2
1,701,254 - paaK-2 DVU1615 0.38 +0.8
1,701,308 - paaK-2 DVU1615 0.43 -0.5

Or see this region's nucleotide sequence