Experiment: MoYLS4 with Zinc Sulfate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1613 and DVU1614 are separated by 13 nucleotides DVU1614 and paaK-2 are separated by 411 nucleotides
DVU1613: DVU1613 - pyridine nucleotide-disulfide oxidoreductase (TIGR), at 1,698,737 to 1,699,795
DVU1613
DVU1614: DVU1614 - iron-sulfur cluster-binding protein (TIGR), at 1,699,809 to 1,700,339
DVU1614
DVU1615: paaK-2 - phenylacetate-coenzyme A ligase (TIGR), at 1,700,751 to 1,702,058
paaK-2
Position (kb)
1699
1700
1701 Strain fitness (log2 ratio)
-1
0
1
2 at 1698.913 kb on - strand, within DVU1613 at 1699.015 kb on + strand, within DVU1613 at 1699.023 kb on - strand, within DVU1613 at 1699.058 kb on - strand, within DVU1613 at 1699.095 kb on - strand, within DVU1613 at 1699.096 kb on + strand, within DVU1613 at 1699.104 kb on - strand, within DVU1613 at 1699.258 kb on + strand, within DVU1613 at 1699.278 kb on - strand, within DVU1613 at 1699.290 kb on - strand, within DVU1613 at 1699.316 kb on - strand, within DVU1613 at 1699.333 kb on + strand, within DVU1613 at 1699.341 kb on - strand, within DVU1613 at 1699.341 kb on - strand, within DVU1613 at 1699.393 kb on - strand, within DVU1613 at 1699.413 kb on + strand, within DVU1613 at 1699.463 kb on + strand, within DVU1613 at 1699.624 kb on - strand, within DVU1613 at 1699.829 kb on + strand at 1699.829 kb on + strand at 1699.829 kb on + strand at 1699.853 kb on + strand at 1699.950 kb on - strand, within DVU1614 at 1699.950 kb on - strand, within DVU1614 at 1699.995 kb on - strand, within DVU1614 at 1699.995 kb on - strand, within DVU1614 at 1700.048 kb on - strand, within DVU1614 at 1700.116 kb on + strand, within DVU1614 at 1700.121 kb on + strand, within DVU1614 at 1700.188 kb on + strand, within DVU1614 at 1700.222 kb on - strand, within DVU1614 at 1700.311 kb on - strand at 1700.336 kb on - strand at 1700.424 kb on - strand at 1700.616 kb on - strand at 1700.755 kb on + strand at 1700.810 kb on - strand at 1700.812 kb on + strand at 1700.919 kb on + strand, within paaK-2 at 1701.006 kb on - strand, within paaK-2 at 1701.104 kb on - strand, within paaK-2 at 1701.112 kb on - strand, within paaK-2 at 1701.123 kb on + strand, within paaK-2 at 1701.131 kb on - strand, within paaK-2 at 1701.254 kb on - strand, within paaK-2 at 1701.308 kb on - strand, within paaK-2
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM remove 1,698,913 - DVU1613 0.17 -0.8 1,699,015 + DVU1613 0.26 +0.5 1,699,023 - DVU1613 0.27 -1.3 1,699,058 - DVU1613 0.30 -1.1 1,699,095 - DVU1613 0.34 +0.8 1,699,096 + DVU1613 0.34 +0.5 1,699,104 - DVU1613 0.35 -0.6 1,699,258 + DVU1613 0.49 +0.2 1,699,278 - DVU1613 0.51 -1.7 1,699,290 - DVU1613 0.52 +0.7 1,699,316 - DVU1613 0.55 +1.0 1,699,333 + DVU1613 0.56 +0.1 1,699,341 - DVU1613 0.57 -0.1 1,699,341 - DVU1613 0.57 +0.7 1,699,393 - DVU1613 0.62 -0.2 1,699,413 + DVU1613 0.64 -1.4 1,699,463 + DVU1613 0.69 +1.5 1,699,624 - DVU1613 0.84 +0.2 1,699,829 + -0.1 1,699,829 + +1.0 1,699,829 + -0.1 1,699,853 + +0.9 1,699,950 - DVU1614 0.27 +1.5 1,699,950 - DVU1614 0.27 +1.1 1,699,995 - DVU1614 0.35 -0.6 1,699,995 - DVU1614 0.35 -1.2 1,700,048 - DVU1614 0.45 +1.8 1,700,116 + DVU1614 0.58 +1.0 1,700,121 + DVU1614 0.59 +0.5 1,700,188 + DVU1614 0.71 +0.2 1,700,222 - DVU1614 0.78 +0.5 1,700,311 - -1.3 1,700,336 - -0.4 1,700,424 - -0.6 1,700,616 - +0.1 1,700,755 + -0.4 1,700,810 - +0.4 1,700,812 + -0.6 1,700,919 + paaK-2 DVU1615 0.13 +0.3 1,701,006 - paaK-2 DVU1615 0.19 +0.2 1,701,104 - paaK-2 DVU1615 0.27 +2.3 1,701,112 - paaK-2 DVU1615 0.28 +0.3 1,701,123 + paaK-2 DVU1615 0.28 -1.0 1,701,131 - paaK-2 DVU1615 0.29 +0.2 1,701,254 - paaK-2 DVU1615 0.38 +0.8 1,701,308 - paaK-2 DVU1615 0.43 -0.5
Or see this region's nucleotide sequence