Experiment: MoYLS4 with Zinc Sulfate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1502 and DVU1503 overlap by 1 nucleotides DVU1503 and DVU1504 are separated by 4 nucleotides DVU1504 and DVU1505 are separated by 83 nucleotides DVU1505 and DVU1506 are separated by 19 nucleotides
DVU1502: DVU1502 - portal protein, HK97 family (TIGR), at 1,576,954 to 1,578,213
DVU1502
DVU1503: DVU1503 - terminase, large subunit (TIGR), at 1,578,213 to 1,579,910
DVU1503
DVU1504: DVU1504 - terminase, small subunit (TIGR), at 1,579,915 to 1,580,382
DVU1504
DVU1505: DVU1505 - holin, putative (TIGR), at 1,580,466 to 1,580,864
DVU1505
DVU1506: DVU1506 - hypothetical protein (TIGR), at 1,580,884 to 1,581,132
DVU1506
Position (kb)
1578
1579
1580 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1577.239 kb on - strand, within DVU1502 at 1577.291 kb on + strand, within DVU1502 at 1577.510 kb on + strand, within DVU1502 at 1577.520 kb on - strand, within DVU1502 at 1577.566 kb on - strand, within DVU1502 at 1577.601 kb on - strand, within DVU1502 at 1577.647 kb on - strand, within DVU1502 at 1577.678 kb on + strand, within DVU1502 at 1577.678 kb on + strand, within DVU1502 at 1577.678 kb on + strand, within DVU1502 at 1577.686 kb on - strand, within DVU1502 at 1577.773 kb on + strand, within DVU1502 at 1577.803 kb on + strand, within DVU1502 at 1577.808 kb on + strand, within DVU1502 at 1577.855 kb on + strand, within DVU1502 at 1577.947 kb on + strand, within DVU1502 at 1577.960 kb on - strand, within DVU1502 at 1577.972 kb on - strand, within DVU1502 at 1578.076 kb on - strand, within DVU1502 at 1578.229 kb on - strand at 1578.229 kb on - strand at 1578.266 kb on + strand at 1578.274 kb on - strand at 1578.307 kb on + strand at 1578.387 kb on + strand, within DVU1503 at 1578.405 kb on - strand, within DVU1503 at 1578.566 kb on - strand, within DVU1503 at 1578.599 kb on + strand, within DVU1503 at 1578.599 kb on + strand, within DVU1503 at 1578.632 kb on - strand, within DVU1503 at 1578.650 kb on - strand, within DVU1503 at 1578.660 kb on - strand, within DVU1503 at 1578.769 kb on + strand, within DVU1503 at 1578.776 kb on + strand, within DVU1503 at 1578.813 kb on - strand, within DVU1503 at 1578.838 kb on - strand, within DVU1503 at 1578.855 kb on - strand, within DVU1503 at 1578.879 kb on + strand, within DVU1503 at 1579.115 kb on - strand, within DVU1503 at 1579.165 kb on - strand, within DVU1503 at 1579.179 kb on - strand, within DVU1503 at 1579.235 kb on + strand, within DVU1503 at 1579.275 kb on + strand, within DVU1503 at 1579.413 kb on - strand, within DVU1503 at 1579.422 kb on + strand, within DVU1503 at 1579.422 kb on + strand, within DVU1503 at 1579.428 kb on - strand, within DVU1503 at 1579.430 kb on - strand, within DVU1503 at 1579.430 kb on - strand, within DVU1503 at 1579.594 kb on - strand, within DVU1503 at 1579.746 kb on - strand at 1579.754 kb on + strand at 1579.770 kb on - strand at 1579.926 kb on - strand at 1579.947 kb on + strand at 1579.973 kb on + strand, within DVU1504 at 1580.028 kb on + strand, within DVU1504 at 1580.036 kb on - strand, within DVU1504 at 1580.090 kb on + strand, within DVU1504 at 1580.098 kb on - strand, within DVU1504 at 1580.105 kb on - strand, within DVU1504 at 1580.115 kb on - strand, within DVU1504 at 1580.210 kb on - strand, within DVU1504 at 1580.241 kb on - strand, within DVU1504 at 1580.323 kb on + strand, within DVU1504 at 1580.345 kb on + strand at 1580.474 kb on + strand at 1580.502 kb on + strand at 1580.541 kb on - strand, within DVU1505 at 1580.553 kb on - strand, within DVU1505 at 1580.553 kb on - strand, within DVU1505 at 1580.625 kb on + strand, within DVU1505 at 1580.796 kb on + strand, within DVU1505 at 1580.819 kb on - strand, within DVU1505
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM remove 1,577,239 - DVU1502 0.23 -1.8 1,577,291 + DVU1502 0.27 -0.1 1,577,510 + DVU1502 0.44 -0.3 1,577,520 - DVU1502 0.45 +0.5 1,577,566 - DVU1502 0.49 -0.2 1,577,601 - DVU1502 0.51 -1.9 1,577,647 - DVU1502 0.55 -0.6 1,577,678 + DVU1502 0.57 +0.0 1,577,678 + DVU1502 0.57 -0.0 1,577,678 + DVU1502 0.57 +1.1 1,577,686 - DVU1502 0.58 +0.2 1,577,773 + DVU1502 0.65 +1.2 1,577,803 + DVU1502 0.67 -0.6 1,577,808 + DVU1502 0.68 +1.3 1,577,855 + DVU1502 0.72 +0.1 1,577,947 + DVU1502 0.79 -1.0 1,577,960 - DVU1502 0.80 +2.4 1,577,972 - DVU1502 0.81 -0.2 1,578,076 - DVU1502 0.89 -1.3 1,578,229 - -1.6 1,578,229 - -0.1 1,578,266 + -0.5 1,578,274 - +0.2 1,578,307 + -1.1 1,578,387 + DVU1503 0.10 +0.2 1,578,405 - DVU1503 0.11 +0.0 1,578,566 - DVU1503 0.21 +1.1 1,578,599 + DVU1503 0.23 +0.8 1,578,599 + DVU1503 0.23 +0.1 1,578,632 - DVU1503 0.25 -0.8 1,578,650 - DVU1503 0.26 +1.4 1,578,660 - DVU1503 0.26 -0.7 1,578,769 + DVU1503 0.33 +1.2 1,578,776 + DVU1503 0.33 +0.4 1,578,813 - DVU1503 0.35 -0.7 1,578,838 - DVU1503 0.37 -0.4 1,578,855 - DVU1503 0.38 -0.9 1,578,879 + DVU1503 0.39 -0.3 1,579,115 - DVU1503 0.53 +0.4 1,579,165 - DVU1503 0.56 +2.3 1,579,179 - DVU1503 0.57 +0.1 1,579,235 + DVU1503 0.60 +0.1 1,579,275 + DVU1503 0.63 +1.4 1,579,413 - DVU1503 0.71 -0.6 1,579,422 + DVU1503 0.71 +0.2 1,579,422 + DVU1503 0.71 +0.0 1,579,428 - DVU1503 0.72 +1.2 1,579,430 - DVU1503 0.72 +0.7 1,579,430 - DVU1503 0.72 +0.5 1,579,594 - DVU1503 0.81 -0.3 1,579,746 - +1.2 1,579,754 + +1.9 1,579,770 - -0.2 1,579,926 - -1.1 1,579,947 + +0.7 1,579,973 + DVU1504 0.12 -1.7 1,580,028 + DVU1504 0.24 +0.0 1,580,036 - DVU1504 0.26 -0.1 1,580,090 + DVU1504 0.37 +0.3 1,580,098 - DVU1504 0.39 -1.6 1,580,105 - DVU1504 0.41 -0.2 1,580,115 - DVU1504 0.43 +0.4 1,580,210 - DVU1504 0.63 +1.6 1,580,241 - DVU1504 0.70 +0.2 1,580,323 + DVU1504 0.87 -0.5 1,580,345 + +0.6 1,580,474 + +1.7 1,580,502 + +0.0 1,580,541 - DVU1505 0.19 -1.0 1,580,553 - DVU1505 0.22 -0.7 1,580,553 - DVU1505 0.22 -0.2 1,580,625 + DVU1505 0.40 -0.2 1,580,796 + DVU1505 0.83 -1.2 1,580,819 - DVU1505 0.88 -0.3
Or see this region's nucleotide sequence