Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1503

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1502 and DVU1503 overlap by 1 nucleotidesDVU1503 and DVU1504 are separated by 4 nucleotidesDVU1504 and DVU1505 are separated by 83 nucleotidesDVU1505 and DVU1506 are separated by 19 nucleotides DVU1502: DVU1502 - portal protein, HK97 family (TIGR), at 1,576,954 to 1,578,213 DVU1502 DVU1503: DVU1503 - terminase, large subunit (TIGR), at 1,578,213 to 1,579,910 DVU1503 DVU1504: DVU1504 - terminase, small subunit (TIGR), at 1,579,915 to 1,580,382 DVU1504 DVU1505: DVU1505 - holin, putative (TIGR), at 1,580,466 to 1,580,864 DVU1505 DVU1506: DVU1506 - hypothetical protein (TIGR), at 1,580,884 to 1,581,132 DVU1506 Position (kb) 1578 1579 1580Strain fitness (log2 ratio) -2 -1 0 1 2at 1577.239 kb on - strand, within DVU1502at 1577.291 kb on + strand, within DVU1502at 1577.510 kb on + strand, within DVU1502at 1577.520 kb on - strand, within DVU1502at 1577.566 kb on - strand, within DVU1502at 1577.601 kb on - strand, within DVU1502at 1577.647 kb on - strand, within DVU1502at 1577.678 kb on + strand, within DVU1502at 1577.678 kb on + strand, within DVU1502at 1577.678 kb on + strand, within DVU1502at 1577.686 kb on - strand, within DVU1502at 1577.773 kb on + strand, within DVU1502at 1577.803 kb on + strand, within DVU1502at 1577.808 kb on + strand, within DVU1502at 1577.855 kb on + strand, within DVU1502at 1577.947 kb on + strand, within DVU1502at 1577.960 kb on - strand, within DVU1502at 1577.972 kb on - strand, within DVU1502at 1578.076 kb on - strand, within DVU1502at 1578.229 kb on - strandat 1578.229 kb on - strandat 1578.266 kb on + strandat 1578.274 kb on - strandat 1578.307 kb on + strandat 1578.387 kb on + strand, within DVU1503at 1578.405 kb on - strand, within DVU1503at 1578.566 kb on - strand, within DVU1503at 1578.599 kb on + strand, within DVU1503at 1578.599 kb on + strand, within DVU1503at 1578.632 kb on - strand, within DVU1503at 1578.650 kb on - strand, within DVU1503at 1578.660 kb on - strand, within DVU1503at 1578.769 kb on + strand, within DVU1503at 1578.776 kb on + strand, within DVU1503at 1578.813 kb on - strand, within DVU1503at 1578.838 kb on - strand, within DVU1503at 1578.855 kb on - strand, within DVU1503at 1578.879 kb on + strand, within DVU1503at 1579.115 kb on - strand, within DVU1503at 1579.165 kb on - strand, within DVU1503at 1579.179 kb on - strand, within DVU1503at 1579.235 kb on + strand, within DVU1503at 1579.275 kb on + strand, within DVU1503at 1579.413 kb on - strand, within DVU1503at 1579.422 kb on + strand, within DVU1503at 1579.422 kb on + strand, within DVU1503at 1579.428 kb on - strand, within DVU1503at 1579.430 kb on - strand, within DVU1503at 1579.430 kb on - strand, within DVU1503at 1579.594 kb on - strand, within DVU1503at 1579.746 kb on - strandat 1579.754 kb on + strandat 1579.770 kb on - strandat 1579.926 kb on - strandat 1579.947 kb on + strandat 1579.973 kb on + strand, within DVU1504at 1580.028 kb on + strand, within DVU1504at 1580.036 kb on - strand, within DVU1504at 1580.090 kb on + strand, within DVU1504at 1580.098 kb on - strand, within DVU1504at 1580.105 kb on - strand, within DVU1504at 1580.115 kb on - strand, within DVU1504at 1580.210 kb on - strand, within DVU1504at 1580.241 kb on - strand, within DVU1504at 1580.323 kb on + strand, within DVU1504at 1580.345 kb on + strandat 1580.474 kb on + strandat 1580.502 kb on + strandat 1580.541 kb on - strand, within DVU1505at 1580.553 kb on - strand, within DVU1505at 1580.553 kb on - strand, within DVU1505at 1580.625 kb on + strand, within DVU1505at 1580.796 kb on + strand, within DVU1505at 1580.819 kb on - strand, within DVU1505

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,577,239 - DVU1502 0.23 -1.8
1,577,291 + DVU1502 0.27 -0.1
1,577,510 + DVU1502 0.44 -0.3
1,577,520 - DVU1502 0.45 +0.5
1,577,566 - DVU1502 0.49 -0.2
1,577,601 - DVU1502 0.51 -1.9
1,577,647 - DVU1502 0.55 -0.6
1,577,678 + DVU1502 0.57 +0.0
1,577,678 + DVU1502 0.57 -0.0
1,577,678 + DVU1502 0.57 +1.1
1,577,686 - DVU1502 0.58 +0.2
1,577,773 + DVU1502 0.65 +1.2
1,577,803 + DVU1502 0.67 -0.6
1,577,808 + DVU1502 0.68 +1.3
1,577,855 + DVU1502 0.72 +0.1
1,577,947 + DVU1502 0.79 -1.0
1,577,960 - DVU1502 0.80 +2.4
1,577,972 - DVU1502 0.81 -0.2
1,578,076 - DVU1502 0.89 -1.3
1,578,229 - -1.6
1,578,229 - -0.1
1,578,266 + -0.5
1,578,274 - +0.2
1,578,307 + -1.1
1,578,387 + DVU1503 0.10 +0.2
1,578,405 - DVU1503 0.11 +0.0
1,578,566 - DVU1503 0.21 +1.1
1,578,599 + DVU1503 0.23 +0.8
1,578,599 + DVU1503 0.23 +0.1
1,578,632 - DVU1503 0.25 -0.8
1,578,650 - DVU1503 0.26 +1.4
1,578,660 - DVU1503 0.26 -0.7
1,578,769 + DVU1503 0.33 +1.2
1,578,776 + DVU1503 0.33 +0.4
1,578,813 - DVU1503 0.35 -0.7
1,578,838 - DVU1503 0.37 -0.4
1,578,855 - DVU1503 0.38 -0.9
1,578,879 + DVU1503 0.39 -0.3
1,579,115 - DVU1503 0.53 +0.4
1,579,165 - DVU1503 0.56 +2.3
1,579,179 - DVU1503 0.57 +0.1
1,579,235 + DVU1503 0.60 +0.1
1,579,275 + DVU1503 0.63 +1.4
1,579,413 - DVU1503 0.71 -0.6
1,579,422 + DVU1503 0.71 +0.2
1,579,422 + DVU1503 0.71 +0.0
1,579,428 - DVU1503 0.72 +1.2
1,579,430 - DVU1503 0.72 +0.7
1,579,430 - DVU1503 0.72 +0.5
1,579,594 - DVU1503 0.81 -0.3
1,579,746 - +1.2
1,579,754 + +1.9
1,579,770 - -0.2
1,579,926 - -1.1
1,579,947 + +0.7
1,579,973 + DVU1504 0.12 -1.7
1,580,028 + DVU1504 0.24 +0.0
1,580,036 - DVU1504 0.26 -0.1
1,580,090 + DVU1504 0.37 +0.3
1,580,098 - DVU1504 0.39 -1.6
1,580,105 - DVU1504 0.41 -0.2
1,580,115 - DVU1504 0.43 +0.4
1,580,210 - DVU1504 0.63 +1.6
1,580,241 - DVU1504 0.70 +0.2
1,580,323 + DVU1504 0.87 -0.5
1,580,345 + +0.6
1,580,474 + +1.7
1,580,502 + +0.0
1,580,541 - DVU1505 0.19 -1.0
1,580,553 - DVU1505 0.22 -0.7
1,580,553 - DVU1505 0.22 -0.2
1,580,625 + DVU1505 0.40 -0.2
1,580,796 + DVU1505 0.83 -1.2
1,580,819 - DVU1505 0.88 -0.3

Or see this region's nucleotide sequence