Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1265

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1264 and DVU1265 are separated by 10 nucleotidesDVU1265 and DVU1266 are separated by 450 nucleotides DVU1264: DVU1264 - transglycosylase SLT domain protein (TIGR), at 1,352,419 to 1,353,180 DVU1264 DVU1265: DVU1265 - hypothetical protein (TIGR), at 1,353,191 to 1,353,940 DVU1265 DVU1266: DVU1266 - hypothetical protein (TIGR), at 1,354,391 to 1,357,828 DVU1266 Position (kb) 1353 1354Strain fitness (log2 ratio) -2 -1 0 1 2at 1352.253 kb on - strandat 1352.282 kb on - strandat 1352.339 kb on + strandat 1352.342 kb on - strandat 1352.347 kb on - strandat 1352.402 kb on - strandat 1352.404 kb on - strandat 1352.406 kb on - strandat 1352.415 kb on + strandat 1352.496 kb on - strand, within DVU1264at 1352.577 kb on + strand, within DVU1264at 1352.605 kb on - strand, within DVU1264at 1352.617 kb on + strand, within DVU1264at 1352.642 kb on - strand, within DVU1264at 1352.702 kb on - strand, within DVU1264at 1352.745 kb on + strand, within DVU1264at 1352.796 kb on - strand, within DVU1264at 1353.004 kb on - strand, within DVU1264at 1353.065 kb on + strand, within DVU1264at 1353.075 kb on + strand, within DVU1264at 1353.078 kb on - strand, within DVU1264at 1353.083 kb on - strand, within DVU1264at 1353.083 kb on - strand, within DVU1264at 1353.109 kb on + strandat 1353.116 kb on - strandat 1353.121 kb on + strandat 1353.121 kb on + strandat 1353.121 kb on + strandat 1353.121 kb on + strandat 1353.121 kb on + strandat 1353.129 kb on - strandat 1353.129 kb on - strandat 1353.129 kb on - strandat 1353.129 kb on - strandat 1353.129 kb on - strandat 1353.139 kb on - strandat 1353.143 kb on + strandat 1353.185 kb on - strandat 1353.231 kb on + strandat 1353.231 kb on + strandat 1353.258 kb on - strandat 1353.284 kb on + strand, within DVU1265at 1353.292 kb on - strand, within DVU1265at 1353.341 kb on + strand, within DVU1265at 1353.529 kb on - strand, within DVU1265at 1353.662 kb on + strand, within DVU1265at 1353.678 kb on - strand, within DVU1265at 1353.678 kb on - strand, within DVU1265at 1353.768 kb on + strand, within DVU1265at 1353.851 kb on - strand, within DVU1265at 1353.974 kb on + strandat 1353.974 kb on + strandat 1353.975 kb on - strandat 1354.061 kb on + strandat 1354.136 kb on - strandat 1354.136 kb on - strandat 1354.161 kb on + strandat 1354.239 kb on - strandat 1354.248 kb on + strandat 1354.389 kb on + strandat 1354.396 kb on + strandat 1354.444 kb on + strandat 1354.514 kb on + strandat 1354.515 kb on + strandat 1354.522 kb on - strandat 1354.522 kb on - strandat 1354.526 kb on + strandat 1354.630 kb on + strandat 1354.661 kb on - strandat 1354.667 kb on - strandat 1354.679 kb on - strandat 1354.782 kb on + strand, within DVU1266at 1354.813 kb on - strand, within DVU1266at 1354.831 kb on + strand, within DVU1266

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,352,253 - -0.3
1,352,282 - +0.2
1,352,339 + +0.1
1,352,342 - -0.1
1,352,347 - -0.8
1,352,402 - -0.6
1,352,404 - -0.5
1,352,406 - -1.9
1,352,415 + -0.1
1,352,496 - DVU1264 0.10 -0.0
1,352,577 + DVU1264 0.21 -0.6
1,352,605 - DVU1264 0.24 +1.5
1,352,617 + DVU1264 0.26 -1.1
1,352,642 - DVU1264 0.29 -0.5
1,352,702 - DVU1264 0.37 -1.5
1,352,745 + DVU1264 0.43 -1.3
1,352,796 - DVU1264 0.49 -1.0
1,353,004 - DVU1264 0.77 -0.9
1,353,065 + DVU1264 0.85 +1.7
1,353,075 + DVU1264 0.86 -1.6
1,353,078 - DVU1264 0.86 -0.0
1,353,083 - DVU1264 0.87 -0.1
1,353,083 - DVU1264 0.87 -0.3
1,353,109 + +0.8
1,353,116 - +0.0
1,353,121 + +0.1
1,353,121 + -0.5
1,353,121 + +0.1
1,353,121 + -0.1
1,353,121 + -1.4
1,353,129 - -0.4
1,353,129 - -2.1
1,353,129 - +0.1
1,353,129 - -0.1
1,353,129 - -0.0
1,353,139 - +0.0
1,353,143 + +0.1
1,353,185 - +0.7
1,353,231 + +1.2
1,353,231 + +0.9
1,353,258 - -0.4
1,353,284 + DVU1265 0.12 +0.6
1,353,292 - DVU1265 0.13 -0.2
1,353,341 + DVU1265 0.20 +0.4
1,353,529 - DVU1265 0.45 +0.5
1,353,662 + DVU1265 0.63 +0.3
1,353,678 - DVU1265 0.65 +1.0
1,353,678 - DVU1265 0.65 -0.1
1,353,768 + DVU1265 0.77 +0.3
1,353,851 - DVU1265 0.88 -1.2
1,353,974 + +0.3
1,353,974 + +0.1
1,353,975 - -1.0
1,354,061 + +0.2
1,354,136 - +0.2
1,354,136 - -0.4
1,354,161 + +0.3
1,354,239 - -0.3
1,354,248 + -0.1
1,354,389 + +0.8
1,354,396 + +0.0
1,354,444 + +0.4
1,354,514 + +1.5
1,354,515 + -0.3
1,354,522 - +0.1
1,354,522 - -0.4
1,354,526 + -0.2
1,354,630 + +0.2
1,354,661 - -1.0
1,354,667 - +0.5
1,354,679 - +2.4
1,354,782 + DVU1266 0.11 -1.3
1,354,813 - DVU1266 0.12 +1.7
1,354,831 + DVU1266 0.13 +1.4

Or see this region's nucleotide sequence